C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 33 homolog B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184056 VPS33B 9606 - 15:90998416-91022603 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333371 VPS33B-001 90998416-91022603 protein_coding
  ENST00000535906 VPS33B-003 90998675-91022596 protein_coding
  ENST00000554264 VPS33B-008 91007902-91018036 retained_intron
  ENST00000554660 VPS33B-005 90999331-91001005 retained_intron
  ENST00000556096 VPS33B-002 91006001-91022603 retained_intron
  ENST00000557358 VPS33B-006 91013804-91022596 processed_transcript
  ENST00000557470 VPS33B-007 90998673-91001433 retained_intron
  ENST00000574755 VPS33B-004 90998675-91022513 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333371ENST00000535906ENST00000554264ENST00000556096ENST00000574755
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333371 0.477±0.00 1.291±0.00 2.093±0.22 0.478±0.00 0.249±0.00 0.298±0.00 0.919±0.22 0.352±0.00 0.539±0.09 0.545±0.00 1.920±0.49 1.375±0.22 1.030±0.13
ENST00000535906 2.031±0.00 5.701±0.00 7.503±0.00 2.699±0.00 2.831±0.00 1.090±0.00 3.459±0.00 1.684±0.00 1.003±0.00 1.180±0.00 2.567±0.31 3.583±0.49 4.384±0.70
ENST00000554264 N/A N/A N/A 2.541±0.00 N/A N/A N/A N/A N/A 3.630±0.00 2.179±0.00 N/A N/A
ENST00000556096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.845±0.00
ENST00000574755 0.810±0.00 N/A 2.163±0.00 0.854±0.30 N/A 0.236±0.00 1.017±0.13 1.130±0.29 1.175±0.82 N/A 1.137±0.00 2.896±0.25 2.905±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707
CIL_0001XZ CIL_0001XZ_0002 CGP 15:90966038-91022603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IMP protein transport
GO:0016192 IDA:IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0031091 IDA platelet alpha granule
GO:0032400 IDA melanosome localization
GO:0032418 IDA lysosome localization
GO:0048471 IDA perinuclear region of cytoplasm
GO:0061025 IMP membrane fusion
GO:0070889 IMP platelet alpha granule organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044813 vps33b vacuolar protein sorting 33B protein_coding Danio_rerio
ENSMUSG00000030534 Vps33b vacuolar protein sorting 33B (yeast) protein_coding Mus_musculus

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