C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: aggrecan
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030607 Acan 10090 + 7:79053483-79115099 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032835 Acan-201 79053483-79115099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032835
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032835 0.019±0.02 0.641±0.41 0.524±0.49 0.011±0.00 0.005±0.00 0.112±0.08 0.003±0.00 0.008±0.01 0.104±0.09 0.009±0.00 0.326±0.12 0.294±0.12 0.093±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011K CIL_00011K_0002 CGP 7:78913424-79115099
CIL_00011L CIL_00011L_0002 CGP 7:79053483-79131018

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001502 IMP cartilage condensation
GO:0002063 IMP chondrocyte development
GO:0005515 IPI protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0030166 IMP proteoglycan biosynthetic process
GO:0030199 IMP collagen fibril organization
GO:0030246 IEA carbohydrate binding
GO:0031012 IDA extracellular matrix
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035891 acana aggrecan a protein_coding Danio_rerio
ENSDARG00000045799 acanb aggrecan b protein_coding Danio_rerio
ENSG00000157766 ACAN aggrecan protein_coding Homo_sapiens

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