Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	aggrecan
ENSMUST00000032835	Acan-201	ENSMUSG00000030607	10090	+	7:79053483-79115099	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000032835	0.019±0.02	0.641±0.41	0.524±0.49	0.011±0.00	0.005±0.00	0.112±0.08	0.003±0.00	0.008±0.01	0.104±0.09	0.009±0.00	0.326±0.12	0.294±0.12	0.093±0.03

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00011K	CIL_00011K_0002	CGP	7:78913424-79115099
CIL_00011L	CIL_00011L_0002	CGP	7:79053483-79131018

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0001502	IMP	cartilage condensation
GO:0002063	IMP	chondrocyte development
GO:0005515	IPI	protein binding
GO:0005540	IEA	hyaluronic acid binding
GO:0005578	IDA	proteinaceous extracellular matrix
GO:0005604	IDA	basement membrane
GO:0007155	IEA	cell adhesion
GO:0030166	IMP	proteoglycan biosynthetic process
GO:0030199	IMP	collagen fibril organization
GO:0030246	IEA	carbohydrate binding
GO:0031012	IDA	extracellular matrix
GO:0046872	IEA	metal ion binding

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000352105	ACAN-004	protein_coding	Homo_sapiens	0	2289
ENST00000439576	ACAN-201	protein_coding	Homo_sapiens	0	2316
ENST00000558207	ACAN-001	protein_coding	Homo_sapiens	0	2156
ENST00000558604	ACAN-002	retained_intron	Homo_sapiens	0	538
ENST00000558704	ACAN-003	protein_coding	Homo_sapiens	0	307
ENST00000559004	ACAN-008	protein_coding	Homo_sapiens	0	2289
ENST00000560601	ACAN-005	protein_coding	Homo_sapiens	5.04467e-44	182
ENST00000561243	ACAN-006	protein_coding	Homo_sapiens	0	2220
ENST00000617301	ACAN-202	protein_coding	Homo_sapiens	0	2316

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