C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spinster homolog 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030741 Spns1 10090 - 7:126370060-126377450 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032994 Spns1-001 126370060-126377450 protein_coding
  ENSMUST00000119754 Spns1-005 126370067-126377411 protein_coding
  ENSMUST00000119846 Spns1-003 126370067-126377411 protein_coding
  ENSMUST00000126810 Spns1-002 126370067-126377411 retained_intron
  ENSMUST00000137263 Spns1-008 126371220-126372919 retained_intron
  ENSMUST00000138141 Spns1-004 126370067-126377411 nonsense_mediated_decay
  ENSMUST00000150476 Spns1-006 126372745-126377207 protein_coding
  ENSMUST00000150748 Spns1-007 126373660-126374363 retained_intron
  ENSMUST00000152000 Spns1-009 126371864-126372562 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032994ENSMUST00000119846ENSMUST00000126810ENSMUST00000138141ENSMUST00000150476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032994 19.092±1.84 26.516±2.74 16.403±2.38 18.366±9.64 19.074±0.72 23.270±2.22 11.048±1.95 26.625±3.66 12.010±1.96 30.250±4.96 12.915±1.00 24.021±6.33 11.975±8.65 3.854±0.30
ENSMUST00000119846 N/A N/A N/A 4.218±0.00 N/A N/A N/A N/A N/A N/A N/A 4.534±0.00 3.135±0.00 N/A
ENSMUST00000126810 7.499±1.56 10.378±3.47 4.771±0.42 6.349±3.22 10.402±2.37 10.160±1.82 2.654±0.50 7.757±1.74 3.039±0.86 10.084±4.55 1.276±0.16 13.840±6.40 2.761±0.78 1.765±0.40
ENSMUST00000138141 N/A N/A N/A N/A N/A N/A N/A N/A 2.506±0.00 N/A N/A N/A N/A 1.401±0.29
ENSMUST00000150476 N/A N/A N/A N/A 16.966±0.00 N/A N/A N/A N/A N/A N/A 7.283±0.25 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AT CIL_0005AT_0002 CGP 7:126370060-126396737

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005743 IEA mitochondrial inner membrane
GO:0005765 IEA lysosomal membrane
GO:0006869 IEA lipid transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011925 spns1 spinster homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000169682 SPNS1 spinster homolog 1 (Drosophila) protein_coding Homo_sapiens

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