C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030744 Rps3 10090 - 7:99477896-99483738 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032998 Rps3-001 99477896-99483738 protein_coding
  ENSMUST00000107096 Rps3-003 99477904-99483651 protein_coding
  ENSMUST00000128174 Rps3-004 99479710-99483634 retained_intron
  ENSMUST00000128725 Rps3-002 99478893-99483650 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032998ENSMUST00000107096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032998 201.906±94.84 97.097±6.69 225.405±0.00 126.319±80.16 192.870±16.95 218.701±31.63 86.481±13.68 181.480±34.43 181.370±129.43 195.099±12.33 56.698±4.54 260.966±76.76 185.813±87.25 31.502±15.91
ENSMUST00000107096 34.539±0.00 N/A 264.185±0.00 165.544±102.35 N/A 77.630±0.00 36.070±7.43 69.047±0.00 167.412±78.36 N/A 64.036±17.62 415.305±449.85 439.824±436.21 30.357±27.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0002 VISTA 7:99059661-99661402
CIL_0008I3 CIL_0008I3_0002 VISTA 7:99464975-100069320

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IBA DNA catabolic process, endonucleolytic
GO:0002181 IBA cytoplasmic translation
GO:0003684 IEA damaged DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0003735 IBA structural constituent of ribosome
GO:0003906 IBA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005925 IEA focal adhesion
GO:0006281 IBA DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0019901 IEA protein kinase binding
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 ISS ribonucleoprotein complex
GO:0032088 IBA negative regulation of NF-kappaB transcription factor activity
GO:0032587 IEA ruffle membrane
GO:0042981 IBA regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045738 IEA negative regulation of DNA repair
GO:0051018 IEA protein kinase A binding
GO:0051059 IEA NF-kappaB binding
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:0070062 IEA extracellular vesicular exosome
GO:0071159 IEA NF-kappaB complex
GO:1902546 IEA positive regulation of DNA N-glycosylase activity
GO:2001235 IEA positive regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046119 rps3 ribosomal protein S3 protein_coding Danio_rerio
ENSG00000149273 RPS3 ribosomal protein S3 protein_coding Homo_sapiens

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