C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107096 Rps3-003 ENSMUSG00000030744 10090 - 7:99477904-99483651 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000107096
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000107096 34.539±0.00 264.185±0.00 165.544±102.35 77.630±0.00 36.070±7.43 69.047±0.00 167.412±78.36 64.036±17.62 415.305±449.85 439.824±436.21 30.357±27.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0002 VISTA 7:99059661-99661402
CIL_0008I3 CIL_0008I3_0002 VISTA 7:99464975-100069320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IBA DNA catabolic process, endonucleolytic
GO:0002181 IBA cytoplasmic translation
GO:0003723 IEA RNA binding
GO:0003735 IBA structural constituent of ribosome
GO:0003906 IBA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IBA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IBA DNA repair
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0032088 IBA negative regulation of NF-kappaB transcription factor activity
GO:0042981 IBA regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278572 RPS3-014 protein_coding Homo_sapiens 0 361
ENST00000407940 RP11-69L16.5-001 processed_pseudogene Homo_sapiens 0 551
ENST00000422465 RPS3-013 protein_coding Homo_sapiens 0 429
ENST00000433853 RP11-778D9.4-001 processed_pseudogene Homo_sapiens 0 573
ENST00000524851 RPS3-022 protein_coding Homo_sapiens 0 676
ENST00000525690 RPS3-023 nonsense_mediated_decay Homo_sapiens 3e-30 135
ENST00000525933 RPS3-008 protein_coding Homo_sapiens 0 209
ENST00000526248 RPS3-025 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000526608 RPS3-021 protein_coding Homo_sapiens 0 327
ENST00000527273 RPS3-020 protein_coding Homo_sapiens 0 298
ENST00000527446 RPS3-004 protein_coding Homo_sapiens 0 688
ENST00000528439 RPS3-010 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000528847 RPS3-019 protein_coding Homo_sapiens 0 599
ENST00000529173 RPS3-005 retained_intron Homo_sapiens 0 361
ENST00000529285 RPS3-017 processed_transcript Homo_sapiens 0 394
ENST00000530164 RPS3-007 protein_coding Homo_sapiens 0 475
ENST00000530170 RPS3-024 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000530721 RPS3-012 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000531188 RPS3-001 protein_coding Homo_sapiens 0 712
ENST00000532872 RPS3-015 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000534440 RPS3-016 protein_coding Homo_sapiens 0 364
ENST00000534555 RPS3-018 processed_transcript Homo_sapiens 0 267

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