C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149273 RPS3 9606 + 11:75399486-75422280 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000278572 RPS3-014 75399530-75405688 protein_coding
  ENST00000422465 RPS3-013 75399520-75405884 protein_coding
  ENST00000524851 RPS3-022 75399543-75404994 protein_coding
  ENST00000525690 RPS3-023 75400692-75405692 nonsense_mediated_decay
  ENST00000525933 RPS3-008 75400692-75405657 protein_coding
  ENST00000526248 RPS3-025 75399557-75405692 nonsense_mediated_decay
  ENST00000526608 RPS3-021 75399537-75404868 protein_coding
  ENST00000527273 RPS3-020 75399542-75404109 protein_coding
  ENST00000527446 RPS3-004 75399531-75422280 protein_coding
  ENST00000528439 RPS3-010 75399518-75405692 nonsense_mediated_decay
  ENST00000528847 RPS3-019 75400404-75404156 protein_coding
  ENST00000529173 RPS3-005 75399515-75404855 retained_intron
  ENST00000529285 RPS3-017 75399670-75404730 processed_transcript
  ENST00000530164 RPS3-007 75399519-75403945 protein_coding
  ENST00000530170 RPS3-024 75400695-75405628 nonsense_mediated_decay
  ENST00000530721 RPS3-012 75399519-75405692 nonsense_mediated_decay
  ENST00000531188 RPS3-001 75399486-75406913 protein_coding
  ENST00000532872 RPS3-015 75399530-75405692 nonsense_mediated_decay
  ENST00000534440 RPS3-016 75399531-75405680 protein_coding
  ENST00000534555 RPS3-018 75399699-75401727 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000422465ENST00000524851ENST00000526248ENST00000526608ENST00000527273ENST00000528439ENST00000528847ENST00000530170ENST00000530721ENST00000531188ENST00000532872ENST00000534440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000422465 N/A N/A N/A N/A N/A N/A 5.150±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000524851 N/A N/A 8.947±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 901.244±565.66 407.612±102.68 139.758±0.00
ENST00000526248 257.440±0.00 637.044±0.00 N/A 30.494±22.92 250.979±0.00 289.962±0.00 118.725±0.00 134.991±0.00 103.142±0.00 560.457±0.00 206.339±0.00 938.395±0.00 336.541±0.00 165.247±53.14
ENST00000526608 N/A N/A N/A 30.799±18.61 44.072±0.00 113.319±74.95 45.081±0.00 142.585±0.00 48.230±5.19 292.530±0.00 61.463±42.95 976.575±180.58 385.219±64.17 215.947±0.00
ENST00000527273 286.610±0.00 N/A N/A 72.867±0.00 253.128±0.00 417.487±0.00 81.710±0.00 N/A 82.811±0.00 405.392±0.00 177.279±0.00 N/A N/A 306.198±0.00
ENST00000528439 N/A N/A N/A 23.771±0.00 70.953±0.00 72.098±0.00 16.683±0.00 36.724±0.00 49.944±0.00 64.980±0.00 N/A 750.015±0.00 295.836±0.00 N/A
ENST00000528847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.848±0.00 N/A N/A N/A
ENST00000530170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1166.473±507.53 774.401±0.00 306.699±0.00
ENST00000530721 470.974±0.00 892.790±0.00 N/A 46.927±38.11 417.074±0.00 627.929±0.00 N/A 156.873±0.00 60.877±0.00 N/A N/A 434.071±0.00 289.844±83.65 408.349±0.00
ENST00000531188 N/A N/A N/A 2.780±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532872 N/A N/A 21.833±0.00 N/A 51.422±0.00 69.672±0.00 11.674±0.00 52.532±0.00 73.662±0.00 68.452±0.00 23.111±0.00 101.505±0.00 N/A N/A
ENST00000534440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 322.942±74.34 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0001 VISTA 11:75253021-75855707

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0002181 IBA cytoplasmic translation
GO:0003684 IDA damaged DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 NAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006974 IEP cellular response to DNA damage stimulus
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019899 IPI enzyme binding
GO:0019901 IPI protein kinase binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0032587 IDA ruffle membrane
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045738 IMP negative regulation of DNA repair
GO:0051018 IPI protein kinase A binding
GO:0051059 IPI NF-kappaB binding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051536 NAS iron-sulfur cluster binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071159 IDA NF-kappaB complex
GO:1902546 IDA positive regulation of DNA N-glycosylase activity
GO:2001235 IDA positive regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046119 rps3 ribosomal protein S3 protein_coding Danio_rerio
ENSMUSG00000030744 Rps3 ribosomal protein S3 protein_coding Mus_musculus

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