C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030816 Rnf40 10090 + 7:127588698-127603605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033088 Rnf40-201 127588698-127603605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033088
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033088 14.217±4.59 13.168±3.85 16.226±0.94 26.546±5.30 12.133±4.81 13.431±1.86 7.462±0.32 11.027±2.54 9.788±2.84 15.569±1.33 8.986±0.94 20.091±6.99 23.757±10.32 40.809±10.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044V CIL_00044V_0003 CGP 7:127582384-127603605
CIL_0000TY CIL_0000TY_0002 CGP 7:127588698-127615797

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010390 IEA histone monoubiquitination
GO:0016020 IEA membrane
GO:0016874 IEA ligase activity
GO:0017075 IEA syntaxin-1 binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032403 IEA protein complex binding
GO:0033503 ISS HULC complex
GO:0033523 IEA histone H2B ubiquitination
GO:0042803 IEA protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054201 rnf40 ring finger protein 40 protein_coding Danio_rerio
ENSG00000103549 RNF40 ring finger protein 40, E3 ubiquitin protein ligase protein_coding Homo_sapiens

Loading