C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 40, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103549 RNF40 9606 + 16:30761745-30776307 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324685 RNF40-001 30761997-30776307 protein_coding
  ENST00000357890 RNF40-009 30762322-30775215 protein_coding
  ENST00000493683 RNF40-002 30762336-30776307 retained_intron
  ENST00000563683 RNF40-011 30762322-30775181 protein_coding
  ENST00000563909 RNF40-012 30761745-30763450 protein_coding
  ENST00000564260 RNF40-018 30767677-30768531 retained_intron
  ENST00000565931 RNF40-015 30762323-30763549 protein_coding
  ENST00000565995 RNF40-010 30762322-30766244 protein_coding
  ENST00000566703 RNF40-017 30765001-30766785 retained_intron
  ENST00000566811 RNF40-013 30762289-30763505 protein_coding
  ENST00000567365 RNF40-019 30769339-30773982 protein_coding
  ENST00000602784 RNF40-020 30774070-30775188 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000324685ENST00000563683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000324685 N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.629±0.00 N/A N/A
ENST00000563683 19.580±0.00 13.595±0.00 4.277±0.00 12.544±8.44 7.916±4.10 5.920±1.48 6.651±3.69 4.613±0.00 7.196±3.16 18.953±11.00 16.286±3.32 30.763±5.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VK CIL_0003VK_0002 CGP 16:30748270-30762710
CIL_00044V CIL_00044V_0002 CGP 16:30757423-30776307
CIL_0000TY CIL_0000TY_0001 CGP 16:30761745-30787202

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010390 IDA histone monoubiquitination
GO:0016020 IDA membrane
GO:0016874 IEA ligase activity
GO:0017075 IEA syntaxin-1 binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032403 IEA protein complex binding
GO:0033503 IDA HULC complex
GO:0033523 IDA histone H2B ubiquitination
GO:0042803 IPI protein homodimerization activity
GO:0043005 ISS neuron projection
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054201 rnf40 ring finger protein 40 protein_coding Danio_rerio
ENSMUSG00000030816 Rnf40 ring finger protein 40 protein_coding Mus_musculus

Loading