C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033088 Rnf40-201 ENSMUSG00000030816 10090 + 7:127588698-127603605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033088
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033088 14.217±4.59 13.168±3.85 16.226±0.94 26.546±5.30 12.133±4.81 13.431±1.86 7.462±0.32 11.027±2.54 9.788±2.84 15.569±1.33 8.986±0.94 20.091±6.99 23.757±10.32 40.809±10.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044V CIL_00044V_0003 CGP 7:127582384-127603605
CIL_0000TY CIL_0000TY_0002 CGP 7:127588698-127615797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010390 IEA histone monoubiquitination
GO:0016020 IEA membrane
GO:0016874 IEA ligase activity
GO:0017075 IEA syntaxin-1 binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032403 IEA protein complex binding
GO:0033503 ISS HULC complex
GO:0033523 IEA histone H2B ubiquitination
GO:0042803 IEA protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324685 RNF40-001 protein_coding Homo_sapiens 0 3583
ENST00000357890 RNF40-009 protein_coding Homo_sapiens 0 2119
ENST00000493683 RNF40-002 retained_intron Homo_sapiens 0 2719
ENST00000563683 RNF40-011 protein_coding Homo_sapiens 0 2331
ENST00000563909 RNF40-012 protein_coding Homo_sapiens 0 390
ENST00000565931 RNF40-015 protein_coding Homo_sapiens 0 422
ENST00000566811 RNF40-013 protein_coding Homo_sapiens 0 418
ENST00000567365 RNF40-019 protein_coding Homo_sapiens 0 545
ENST00000602784 RNF40-020 nonsense_mediated_decay Homo_sapiens 6e-20 102

Loading