C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine rich nucleolar protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116280 Knop1-202 ENSMUSG00000030980 10090 - 7:118842222-118855998 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMusclePlacentaTestisENSMUST00000116280
Transcript ID Bladder Brain Liver Muscle Placenta Testis
ENSMUST00000116280 8.800±0.74 11.047±0.81 8.316±2.32 3.679±0.34 10.268±0.84 5.766±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MW CIL_0006MW_0002 CGP 7:118712552-118842966
CIL_00054B CIL_00054B_0002 CGP 7:118740226-118856254
CIL_0006MO CIL_0006MO_0002 CGP 7:118842222-118972652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219837 KNOP1-001 protein_coding Homo_sapiens 0 243
ENST00000358374 KNOP1P5-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000445020 KNOP1P4-001 processed_pseudogene Homo_sapiens 2e-22 111
ENST00000567367 KNOP1-003 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000568230 KNOP1-005 protein_coding Homo_sapiens 0 243

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