C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRCA2 and CDKN1A interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030983 Bccip 10090 + 7:133709333-133721145 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033282 Bccip-001 133709333-133721145 protein_coding
  ENSMUST00000132885 Bccip-003 133709402-133714313 processed_transcript
  ENSMUST00000140472 Bccip-005 133717379-133719215 retained_intron
  ENSMUST00000151711 Bccip-004 133714742-133720941 processed_transcript
  ENSMUST00000157077 Bccip-002 133709348-133715446 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033282ENSMUST00000151711ENSMUST00000157077
Transcript ID Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033282 35.659±3.88 18.224±1.24 8.568±0.59 9.321±0.59 24.073±14.89 N/A 36.392±3.94 26.161±1.37 30.749±9.32 N/A
ENSMUST00000151711 N/A 37.343±0.00 12.890±1.90 22.757±5.44 16.015±4.10 13.589±1.54 N/A 43.626±23.92 53.921±26.75 14.284±0.00
ENSMUST00000157077 N/A 16.979±0.00 N/A N/A N/A N/A N/A 34.102±0.00 23.774±0.00 8.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JY CIL_0002JY_0003 CGP 7:133674270-133710072
CIL_0001V6 CIL_0001V6_0002 CGP 7:133686243-133721145
CIL_0001V9 CIL_0001V9_0002 CGP 7:133709333-133782726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0006281 IEA DNA repair
GO:0007049 IEA cell cycle
GO:0019207 IEA kinase regulator activity
GO:0019908 IEA nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0044822 IEA poly(A) RNA binding
GO:0061101 IEA neuroendocrine cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004948 bccip BRCA2 and CDKN1A interacting protein protein_coding Danio_rerio
ENSG00000107949 BCCIP BRCA2 and CDKN1A interacting protein protein_coding Homo_sapiens

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