C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 66
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031026 Trim66 10090 - 7:109449006-109508134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033339 Trim66-003 109453491-109508134 protein_coding
  ENSMUST00000106739 Trim66-001 109449006-109493738 protein_coding
  ENSMUST00000106741 Trim66-002 109453491-109508134 protein_coding
  ENSMUST00000137704 Trim66-004 109469711-109475134 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033339ENSMUST00000106739ENSMUST00000106741
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033339 N/A 0.054±0.00 N/A N/A 0.023±0.00 N/A 0.011±0.00 0.018±0.01 N/A 0.059±0.00 N/A N/A 5.419±2.29
ENSMUST00000106739 0.047±0.02 0.096±0.03 0.440±0.01 0.139±0.02 0.042±0.02 0.029±0.00 0.012±0.01 0.019±0.01 0.055±0.02 0.021±0.01 0.174±0.06 0.015±0.01 1.685±0.65
ENSMUST00000106741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049G CIL_00049G_0002 CGP 7:109279223-109508134
CIL_00049H CIL_00049H_0002 CGP 7:109449006-109522367

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0010369 IDA chromocenter
GO:0016235 IEA aggresome
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054332 trim66 tripartite motif containing 66 protein_coding Danio_rerio
ENSG00000166436 TRIM66 tripartite motif containing 66 protein_coding Homo_sapiens

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