C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 66
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033339 Trim66-003 ENSMUSG00000031026 10090 - 7:109453491-109508134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverMuscleTestisENSMUST00000033339
Transcript ID Adrenal Colon Kidney Liver Muscle Testis
ENSMUST00000033339 0.054±0.00 0.023±0.00 0.011±0.00 0.018±0.01 0.059±0.00 5.419±2.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049G CIL_00049G_0002 CGP 7:109279223-109508134
CIL_00049H CIL_00049H_0002 CGP 7:109449006-109522367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0010369 IDA chromocenter
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299550 TRIM66-201 protein_coding Homo_sapiens 0 2569
ENST00000402157 TRIM66-001 protein_coding Homo_sapiens 0 4272
ENST00000481014 TRIM66-002 retained_intron Homo_sapiens 0 2569
ENST00000525788 TRIM66-007 retained_intron Homo_sapiens 0 817
ENST00000529057 TRIM66-004 processed_transcript Homo_sapiens 0 466
ENST00000530502 TRIM66-005 protein_coding Homo_sapiens 0 797
ENST00000531498 TRIM66-003 processed_transcript Homo_sapiens 0 857

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