C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084383 Rbm10-002 ENSMUSG00000031060 10090 + X:20617783-20650901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000084383
Transcript ID Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000084383 9.146±0.59 17.519±7.33 10.044±0.00 12.350±4.48 20.678±14.03 20.077±11.00 2.992±1.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GB CIL_0005GB_0002 CGP X:20549787-20617619
CIL_0005GA CIL_0005GA_0002 CGP X:20615326-20650901
CIL_0005G9 CIL_0005G9_0002 CGP X:20617503-20683179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0008270 IEA zinc ion binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0034391 IGI regulation of smooth muscle cell apoptotic process
GO:0034393 IDA positive regulation of smooth muscle cell apoptotic process
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329236 RBM10-201 protein_coding Homo_sapiens 0 3000
ENST00000345781 RBM10-001 protein_coding Homo_sapiens 0 3522
ENST00000377604 RBM10-005 protein_coding Homo_sapiens 0 2998
ENST00000478410 RBM10-004 processed_transcript Homo_sapiens 0 702
ENST00000496012 RBM10-003 processed_transcript Homo_sapiens 0 387

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