C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptophysin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031144 Syp 10090 + X:7638471-7653256 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069520 Syp-001 7638471-7653256 protein_coding
  ENSMUST00000128890 Syp-003 7638722-7644294 protein_coding
  ENSMUST00000134355 Syp-006 7643909-7645033 retained_intron
  ENSMUST00000137515 Syp-005 7639761-7644242 retained_intron
  ENSMUST00000149795 Syp-002 7638638-7647369 retained_intron
  ENSMUST00000150572 Syp-004 7639305-7644283 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069520ENSMUST00000150572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069520 5.048±3.76 2.545±0.66 1.114±0.08 65.825±37.83 2.297±0.25 2.892±0.37 0.733±0.05 2.428±0.09 0.188±0.07 1.775±0.14 0.501±0.08 1.254±0.30 1.633±1.15 0.110±0.02
ENSMUST00000150572 9.665±6.60 N/A N/A N/A 3.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V1 CIL_0003V1_0002 CGP X:7607083-7653256

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0006897 ISS endocytosis
GO:0007268 TAS synaptic transmission
GO:0008021 IDA synaptic vesicle
GO:0015485 IEA cholesterol binding
GO:0016020 IDA membrane
GO:0017075 ISO syntaxin-1 binding
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0030672 IDA synaptic vesicle membrane
GO:0032403 IEA protein complex binding
GO:0042169 IDA SH2 domain binding
GO:0042734 IDA presynaptic membrane
GO:0042802 IPI identical protein binding
GO:0043005 IDA neuron projection
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0044306 IDA neuron projection terminus
GO:0045202 IDA synapse
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity
GO:0048786 IDA presynaptic active zone
GO:0060076 IDA excitatory synapse
GO:0071310 IDA cellular response to organic substance
GO:2000474 ISS regulation of opioid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002230 sypb synaptophysin b protein_coding Danio_rerio
ENSDARG00000042974 sypa synaptophysin a protein_coding Danio_rerio
ENSG00000102003 SYP synaptophysin protein_coding Homo_sapiens

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