C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptophysin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102003 SYP 9606 - X:49187804-49200259 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263233 SYP-001 49187804-49200259 protein_coding
  ENST00000376303 SYP-003 49189253-49200193 nonsense_mediated_decay
  ENST00000466635 SYP-008 49194311-49200193 nonsense_mediated_decay
  ENST00000469389 SYP-009 49194191-49200193 nonsense_mediated_decay
  ENST00000472598 SYP-002 49189137-49200176 protein_coding
  ENST00000472737 SYP-007 49197377-49200195 retained_intron
  ENST00000479808 SYP-004 49190542-49200199 protein_coding
  ENST00000494396 SYP-005 49197017-49200195 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263233ENST00000376303ENST00000469389ENST00000472598ENST00000479808ENST00000494396
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263233 0.372±0.00 0.383±0.00 145.854±23.00 0.458±0.06 4.613±3.95 0.976±0.00 1.076±0.98 0.331±0.00 1.104±0.72 0.081±0.00 0.706±0.52 0.716±0.47 0.978±0.00
ENST00000376303 N/A N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A N/A N/A 0.343±0.00 N/A
ENST00000469389 N/A N/A N/A N/A 0.636±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472598 N/A N/A N/A N/A N/A N/A N/A 0.466±0.00 N/A N/A N/A N/A N/A
ENST00000479808 0.483±0.00 0.057±0.00 N/A 0.291±0.00 N/A 0.163±0.00 0.910±0.00 N/A N/A N/A 0.053±0.00 N/A N/A
ENST00000494396 0.204±0.00 0.032±0.00 N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A 0.156±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006897 ISS endocytosis
GO:0008021 ISS synaptic vesicle
GO:0015485 IDA cholesterol binding
GO:0016020 IEA membrane
GO:0016188 NAS synaptic vesicle maturation
GO:0017075 IEA syntaxin-1 binding
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030285 NAS integral component of synaptic vesicle membrane
GO:0030672 IEA synaptic vesicle membrane
GO:0032403 IEA protein complex binding
GO:0042169 IEA SH2 domain binding
GO:0042734 IEA presynaptic membrane
GO:0042802 IEA identical protein binding
GO:0043005 ISS neuron projection
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0043621 TAS protein self-association
GO:0044306 IEA neuron projection terminus
GO:0045202 IEA synapse
GO:0048168 IBA regulation of neuronal synaptic plasticity
GO:0048169 ISS regulation of long-term neuronal synaptic plasticity
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048499 NAS synaptic vesicle membrane organization
GO:0048786 IEA presynaptic active zone
GO:0060076 IEA excitatory synapse
GO:0071310 IEA cellular response to organic substance
GO:2000474 ISS regulation of opioid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002230 sypb synaptophysin b protein_coding Danio_rerio
ENSDARG00000042974 sypa synaptophysin a protein_coding Danio_rerio
ENSMUSG00000031144 Syp synaptophysin protein_coding Mus_musculus

Loading