C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003V1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000023683-ENSDARG00000042974 CGP 7955 8:23712661-23800200
GeneTranscriptPositionBiotype
ENSDARG00000023683 (cacna1f)
calcium channel, voltage-dependent, alpha 1F subunit 		ENSDART00000041564 (cacna1f-201) 23712846-23779165 protein_coding
ENSDART00000134151 (cacna1f-001) 23712661-23767555 protein_coding
ENSDART00000136403 (cacna1f-002) 23769479-23779257 protein_coding
ENSDARG00000042974 (sypa)
synaptophysin a 		ENSDART00000063096 (sypa-001) 23784370-23800200 protein_coding

Danio rerio Ensembl (Zv9)

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Transcripts
Structures from Ensembl
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CIL_0003V1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031142-ENSMUSG00000031144 CGP 10090 X:7607083-7653256
GeneTranscriptPositionBiotype
ENSMUSG00000031142 (Cacna1f)
calcium channel, voltage-dependent, alpha 1F subunit 		ENSMUST00000115725 (Cacna1f-002) 7607129-7635196 protein_coding
ENSMUST00000115726 (Cacna1f-001) 7607099-7635196 protein_coding
ENSMUST00000123979 (Cacna1f-007) 7626230-7627941 retained_intron
ENSMUST00000128628 (Cacna1f-009) 7627194-7630246 protein_coding
ENSMUST00000133637 (Cacna1f-005) 7607120-7619133 protein_coding
ENSMUST00000141634 (Cacna1f-004) 7607144-7635194 retained_intron
ENSMUST00000144522 (Cacna1f-006) 7607098-7618109 retained_intron
ENSMUST00000151208 (Cacna1f-011) 7631276-7632989 retained_intron
ENSMUST00000155090 (Cacna1f-003) 7607083-7635193 nonsense_mediated_decay
ENSMUST00000156047 (Cacna1f-008) 7627194-7630499 protein_coding
ENSMUST00000157000 (Cacna1f-010) 7628189-7629762 retained_intron
ENSMUSG00000031144 (Syp)
synaptophysin 		ENSMUST00000069520 (Syp-001) 7638471-7653256 protein_coding
ENSMUST00000128890 (Syp-003) 7638722-7644294 protein_coding
ENSMUST00000134355 (Syp-006) 7643909-7645033 retained_intron
ENSMUST00000137515 (Syp-005) 7639761-7644242 retained_intron
ENSMUST00000149795 (Syp-002) 7638638-7647369 retained_intron
ENSMUST00000150572 (Syp-004) 7639305-7644283 processed_transcript
ENSMUSG00000087644 (Gm14703)
predicted gene 14703 		ENSMUST00000145894 (Gm14703-001) 7651106-7657258 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003V1_0001ENSDARG00000023683ENSDART00000041564ENSDART00000134151ENSDART00000136403ENSDARG00000042974ENSDART00000063096CIL_0003V1_0002ENSMUSG00000031142ENSMUST00000115725ENSMUST00000115726ENSMUST00000123979ENSMUST00000128628ENSMUST00000133637ENSMUST00000141634ENSMUST00000144522ENSMUST00000151208ENSMUST00000155090ENSMUST00000156047ENSMUST00000157000ENSMUSG00000031144ENSMUST00000069520ENSMUST00000128890ENSMUST00000134355ENSMUST00000137515ENSMUST00000149795ENSMUST00000150572ENSMUSG00000087644ENSMUST00000145894
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003V1_0001ENSDARG00000023683ENSDART00000041564ENSDART00000134151ENSDART00000136403ENSDARG00000042974ENSDART00000063096CIL_0003V1_0002ENSMUSG00000031142ENSMUST00000115725ENSMUST00000115726ENSMUST00000123979ENSMUST00000128628ENSMUST00000133637ENSMUST00000141634ENSMUST00000144522ENSMUST00000151208ENSMUST00000155090ENSMUST00000157000ENSMUSG00000031144ENSMUST00000069520ENSMUST00000150572ENSMUSG00000087644ENSMUST00000145894
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000023683 ENSDART00000041564 N/A N/A N/A N/A N/A N/A 0.008±0.00 0.011±0.00 0.020±0.00 N/A N/A N/A N/A N/A
ENSDART00000134151 N/A N/A N/A 0.308±0.21 N/A N/A N/A 0.034±0.02 0.030±0.00 N/A 0.040±0.00 N/A N/A N/A
ENSDART00000136403 N/A N/A N/A 0.485±0.00 N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A
ENSDARG00000042974 ENSDART00000063096 N/A N/A N/A 119.167±135.25 N/A N/A 0.196±0.04 0.428±0.00 0.358±0.00 N/A 11.909±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031142 ENSMUST00000115725 0.008±0.00 0.010±0.01 N/A 0.027±0.00 0.011±0.00 0.001±0.00 0.005±0.00 0.007±0.01 0.018±0.01 N/A 0.017±0.00 0.020±0.01 0.011±0.01 0.004±0.00
ENSMUST00000115726 N/A 0.002±0.00 N/A N/A N/A N/A 0.002±0.00 0.001±0.00 N/A N/A N/A 0.003±0.00 0.002±0.00 N/A
ENSMUST00000123979 N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A
ENSMUST00000128628 N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 0.034±0.00 N/A
ENSMUST00000133637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUST00000141634 0.028±0.00 0.018±0.00 0.009±0.00 0.028±0.01 0.054±0.00 N/A N/A 0.010±0.00 N/A N/A N/A N/A 0.006±0.00 0.019±0.01
ENSMUST00000144522 N/A N/A 0.002±0.00 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A 0.022±0.01 0.014±0.00 0.004±0.00
ENSMUST00000151208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 0.281±0.00 N/A 0.056±0.01
ENSMUST00000155090 0.012±0.01 0.015±0.02 N/A N/A 0.074±0.00 0.007±0.00 0.004±0.00 0.005±0.01 0.011±0.01 N/A N/A 0.025±0.02 0.002±0.00 0.027±0.00
ENSMUST00000156047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157000 N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031144 ENSMUST00000069520 5.048±3.76 2.545±0.66 1.114±0.08 65.825±37.83 2.297±0.25 2.892±0.37 0.733±0.05 2.428±0.09 0.188±0.07 1.775±0.14 0.501±0.08 1.254±0.30 1.633±1.15 0.110±0.02
ENSMUST00000128890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150572 9.665±6.60 N/A N/A N/A 3.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087644 ENSMUST00000145894 1.848±1.16 2.955±0.42 0.965±0.12 166.212±150.93 0.920±0.26 0.942±0.09 0.619±0.09 1.254±0.12 0.308±0.08 0.709±0.15 0.732±0.17 0.771±0.33 3.873±4.16 0.152±0.08

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