C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069520 Syp-001 ENSMUSG00000031144 10090 + X:7638471-7653256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069520 5.048±3.76 2.545±0.66 1.114±0.08 65.825±37.83 2.297±0.25 2.892±0.37 0.733±0.05 2.428±0.09 0.188±0.07 1.775±0.14 0.501±0.08 1.254±0.30 1.633±1.15 0.110±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V1 CIL_0003V1_0002 CGP X:7607083-7653256

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0006897 ISS endocytosis
GO:0007268 TAS synaptic transmission
GO:0008021 IDA synaptic vesicle
GO:0015485 IEA cholesterol binding
GO:0016020 IDA membrane
GO:0017075 ISO syntaxin-1 binding
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0030672 IDA synaptic vesicle membrane
GO:0032403 IEA protein complex binding
GO:0042169 IDA SH2 domain binding
GO:0042734 IDA presynaptic membrane
GO:0042802 IPI identical protein binding
GO:0043005 IDA neuron projection
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0044306 IDA neuron projection terminus
GO:0045202 IDA synapse
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity
GO:0048786 IDA presynaptic active zone
GO:0060076 IDA excitatory synapse
GO:0071310 IDA cellular response to organic substance
GO:2000474 ISS regulation of opioid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263233 SYP-001 protein_coding Homo_sapiens 0 1657
ENST00000376303 SYP-003 nonsense_mediated_decay Homo_sapiens 0 957
ENST00000466635 SYP-008 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000469389 SYP-009 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000472598 SYP-002 protein_coding Homo_sapiens 0 869
ENST00000472737 SYP-007 retained_intron Homo_sapiens 0 327
ENST00000479808 SYP-004 protein_coding Homo_sapiens 0 1262
ENST00000494396 SYP-005 retained_intron Homo_sapiens 4.2039e-45 187

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