C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031273 Col4a6 10090 - X:141165403-141474076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000101205 Col4a6-001 141165403-141474076 protein_coding
  ENSMUST00000137051 Col4a6-002 141186191-141207602 processed_transcript
  ENSMUST00000151459 Col4a6-003 141189745-141192629 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101205ENSMUST00000137051
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101205 2.473±1.66 0.140±0.12 8.779±3.04 0.673±0.37 0.829±0.45 1.224±0.27 0.483±0.15 0.389±0.08 0.061±0.06 2.139±0.43 0.070±0.02 3.684±1.35 0.529±0.49 0.302±0.16
ENSMUST00000137051 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JL CIL_0006JL_0002 CGP X:140956907-141474076
CIL_000172 CIL_000172_0003 CGP X:141165403-141689234

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IDA structural molecule activity
GO:0005201 IEA extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0030198 IDA extracellular matrix organization
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052061 col4a6 collagen, type IV, alpha 6 protein_coding Danio_rerio
ENSG00000197565 COL4A6 collagen, type IV, alpha 6 protein_coding Homo_sapiens

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