C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197565 COL4A6 9606 - X:108155607-108439497 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334504 COL4A6-002 108155607-108438430 protein_coding
  ENST00000372216 COL4A6-001 108155607-108439472 protein_coding
  ENST00000394872 COL4A6-201 108155608-108438430 protein_coding
  ENST00000461897 COL4A6-004 108267642-108438430 processed_transcript
  ENST00000468338 COL4A6-005 108213792-108439472 retained_intron
  ENST00000477085 COL4A6-003 108267642-108439497 processed_transcript
  ENST00000487645 COL4A6-006 108161631-108163598 processed_transcript
  ENST00000538570 COL4A6-202 108155608-108438430 protein_coding
  ENST00000545689 COL4A6-203 108155891-108438430 protein_coding
  ENST00000621266 COL4A6-204 108155608-108438430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334504ENST00000372216ENST00000394872ENST00000461897ENST00000468338ENST00000487645ENST00000538570ENST00000545689ENST00000621266
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334504 0.030±0.00 N/A N/A 0.366±0.00 0.285±0.02 N/A 2.161±0.00 N/A 0.764±0.00 N/A 1.082±0.69 1.819±0.95 1.601±0.80
ENST00000372216 N/A 1.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394872 N/A N/A N/A N/A N/A N/A N/A 6.479±0.00 N/A N/A N/A N/A N/A
ENST00000461897 N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468338 N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A 0.716±0.00 N/A 1.310±0.00 N/A N/A
ENST00000487645 N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A
ENST00000538570 N/A N/A N/A 0.044±0.00 N/A N/A N/A 1.165±1.12 0.142±0.00 N/A 0.614±0.00 N/A N/A
ENST00000545689 0.213±0.00 0.619±0.00 0.074±0.00 N/A N/A 0.350±0.00 N/A N/A N/A 0.192±0.07 N/A N/A N/A
ENST00000621266 N/A N/A 0.121±0.00 N/A N/A 0.667±0.25 N/A N/A N/A N/A 0.277±0.00 0.271±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JL CIL_0006JL_0001 CGP X:108091668-108439497
CIL_000172 CIL_000172_0002 CGP X:108155607-108697545

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 NAS collagen type IV trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0071230 IEA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052061 col4a6 collagen, type IV, alpha 6 protein_coding Danio_rerio
ENSMUSG00000031273 Col4a6 collagen, type IV, alpha 6 protein_coding Mus_musculus

Loading