C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101205 Col4a6-001 ENSMUSG00000031273 10090 - X:141165403-141474076 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101205 2.473±1.66 0.140±0.12 8.779±3.04 0.673±0.37 0.829±0.45 1.224±0.27 0.483±0.15 0.389±0.08 0.061±0.06 2.139±0.43 0.070±0.02 3.684±1.35 0.529±0.49 0.302±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JL CIL_0006JL_0002 CGP X:140956907-141474076
CIL_000172 CIL_000172_0003 CGP X:141165403-141689234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IDA structural molecule activity
GO:0005201 IEA extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0030198 IDA extracellular matrix organization
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334504 COL4A6-002 protein_coding Homo_sapiens 0 4625
ENST00000372216 COL4A6-001 protein_coding Homo_sapiens 0 4409
ENST00000394872 COL4A6-201 protein_coding Homo_sapiens 0 2850
ENST00000468338 COL4A6-005 retained_intron Homo_sapiens 0 444
ENST00000538570 COL4A6-202 protein_coding Homo_sapiens 0 2868
ENST00000545689 COL4A6-203 protein_coding Homo_sapiens 0 3310
ENST00000621266 COL4A6-204 protein_coding Homo_sapiens 0 2868

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