C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006JL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101844-ENSG00000197565 CGP 9606 X:108091668-108439497
GeneTranscriptPositionBiotype
ENSG00000101844 (ATG4A)
autophagy related 4A, cysteine peptidase 		ENST00000343524 (ATG4A-004) 108091810-108154671 nonsense_mediated_decay
ENST00000345734 (ATG4A-002) 108091668-108154671 protein_coding
ENST00000372232 (ATG4A-001) 108091668-108154671 protein_coding
ENST00000372246 (ATG4A-003) 108091784-108154671 nonsense_mediated_decay
ENST00000394892 (ATG4A-005) 108126077-108151858 protein_coding
ENST00000457035 (ATG4A-006) 108091769-108150175 protein_coding
ENST00000474825 (ATG4A-007) 108150032-108153010 processed_transcript
ENST00000489247 (ATG4A-008) 108150068-108153868 processed_transcript
ENSG00000189372 (RP6-149D17.1)
 ENST00000453808 (RP6-149D17.1-001) 108383398-108383993 unprocessed_pseudogene
ENSG00000197565 (COL4A6)
collagen, type IV, alpha 6 		ENST00000334504 (COL4A6-002) 108155607-108438430 protein_coding
ENST00000372216 (COL4A6-001) 108155607-108439472 protein_coding
ENST00000394872 (COL4A6-201) 108155608-108438430 protein_coding
ENST00000461897 (COL4A6-004) 108267642-108438430 processed_transcript
ENST00000468338 (COL4A6-005) 108213792-108439472 retained_intron
ENST00000477085 (COL4A6-003) 108267642-108439497 processed_transcript
ENST00000487645 (COL4A6-006) 108161631-108163598 processed_transcript
ENST00000538570 (COL4A6-202) 108155608-108438430 protein_coding
ENST00000545689 (COL4A6-203) 108155891-108438430 protein_coding
ENST00000621266 (COL4A6-204) 108155608-108438430 protein_coding
CIL_0006JL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079418-ENSMUSG00000031273 CGP 10090 X:140956907-141474076
GeneTranscriptPositionBiotype
ENSMUSG00000031273 (Col4a6)
collagen, type IV, alpha 6 		ENSMUST00000101205 (Col4a6-001) 141165403-141474076 protein_coding
ENSMUST00000137051 (Col4a6-002) 141186191-141207602 processed_transcript
ENSMUST00000151459 (Col4a6-003) 141189745-141192629 retained_intron
ENSMUSG00000079418 (Atg4a)
autophagy related 4A, cysteine peptidase 		ENSMUST00000112971 (Atg4a-001) 140956907-141164270 protein_coding
ENSMUST00000147972 (Atg4a-003) 141162095-141163455 retained_intron
ENSMUST00000153742 (Atg4a-002) 140956950-140992837 processed_transcript
ENSMUSG00000081029 (Gm15077)
predicted gene 15077 		ENSMUST00000122344 (Gm15077-001) 141302349-141302710 processed_pseudogene
ENSMUSG00000082223 (Gm15079)
predicted gene 15079 		ENSMUST00000121943 (Gm15079-001) 141434973-141435188 processed_pseudogene
ENSMUSG00000083710 (Gm15078)
predicted gene 15078 		ENSMUST00000118371 (Gm15078-001) 141356178-141356959 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006JL_0001ENSG00000101844ENST00000343524ENST00000345734ENST00000372232ENST00000372246ENST00000394892ENST00000457035ENST00000474825ENST00000489247ENSG00000189372ENST00000453808ENSG00000197565ENST00000334504ENST00000372216ENST00000394872ENST00000461897ENST00000468338ENST00000477085ENST00000487645ENST00000538570ENST00000545689ENST00000621266CIL_0006JL_0002ENSMUSG00000031273ENSMUST00000101205ENSMUST00000137051ENSMUST00000151459ENSMUSG00000079418ENSMUST00000112971ENSMUST00000147972ENSMUST00000153742ENSMUSG00000081029ENSMUST00000122344ENSMUSG00000082223ENSMUST00000121943ENSMUSG00000083710ENSMUST00000118371
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006JL_0001ENSG00000101844ENST00000343524ENST00000345734ENST00000372232ENST00000372246ENST00000394892ENSG00000189372ENST00000453808ENSG00000197565ENST00000334504ENST00000372216ENST00000394872ENST00000461897ENST00000468338ENST00000487645ENST00000538570ENST00000545689ENST00000621266CIL_0006JL_0002ENSMUSG00000031273ENSMUST00000101205ENSMUST00000137051ENSMUSG00000079418ENSMUST00000112971ENSMUST00000147972ENSMUSG00000081029ENSMUST00000122344ENSMUSG00000082223ENSMUST00000121943ENSMUSG00000083710ENSMUST00000118371
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101844 ENST00000343524 N/A 1.532±0.00 N/A N/A N/A 0.664±0.00 1.233±0.00 N/A N/A 1.495±0.00 0.626±0.00 N/A 0.465±0.00 1.493±0.00
ENST00000345734 1.576±0.00 N/A N/A 0.843±0.00 N/A N/A N/A N/A N/A 0.704±0.00 N/A 0.616±0.00 N/A N/A
ENST00000372232 1.076±0.00 N/A N/A 0.334±0.00 2.739±0.84 1.680±0.69 1.724±1.00 3.670±2.96 4.440±0.00 3.159±0.00 1.355±0.00 1.485±0.82 2.341±0.38 0.732±0.07
ENST00000372246 0.576±0.00 0.606±0.00 N/A 0.417±0.20 N/A 0.262±0.00 0.595±0.04 N/A 1.068±0.00 0.850±0.53 0.508±0.20 0.414±0.00 0.624±0.14 2.175±0.05
ENST00000394892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A 2.169±0.00 N/A
ENST00000457035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189372 ENST00000453808 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A 0.312±0.00 N/A 0.044±0.00
ENSG00000197565 ENST00000334504 0.030±0.00 N/A N/A N/A 0.366±0.00 0.285±0.02 N/A 2.161±0.00 N/A 0.764±0.00 N/A 1.082±0.69 1.819±0.95 1.601±0.80
ENST00000372216 N/A 1.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394872 N/A N/A N/A N/A N/A N/A N/A N/A 6.479±0.00 N/A N/A N/A N/A N/A
ENST00000461897 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468338 N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A 0.716±0.00 N/A 1.310±0.00 N/A N/A
ENST00000477085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487645 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A
ENST00000538570 N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A 1.165±1.12 0.142±0.00 N/A 0.614±0.00 N/A N/A
ENST00000545689 0.213±0.00 0.619±0.00 N/A 0.074±0.00 N/A N/A 0.350±0.00 N/A N/A N/A 0.192±0.07 N/A N/A N/A
ENST00000621266 N/A N/A N/A 0.121±0.00 N/A N/A 0.667±0.25 N/A N/A N/A N/A 0.277±0.00 0.271±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031273 ENSMUST00000101205 2.473±1.66 0.140±0.12 8.779±3.04 0.673±0.37 0.829±0.45 1.224±0.27 0.483±0.15 0.389±0.08 0.061±0.06 2.139±0.43 0.070±0.02 3.684±1.35 0.529±0.49 0.302±0.16
ENSMUST00000137051 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A
ENSMUST00000151459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079418 ENSMUST00000112971 1.526±0.59 0.800±0.24 5.220±1.03 1.053±0.42 1.139±0.39 1.339±0.54 1.905±0.66 2.634±0.67 4.656±3.49 1.269±0.26 11.163±0.57 1.549±1.85 8.135±3.59 1.061±0.53
ENSMUST00000147972 1.554±0.54 0.672±0.29 N/A 2.687±0.00 0.763±0.02 0.625±0.28 N/A N/A 0.740±0.00 1.924±0.63 N/A 1.093±0.18 2.313±0.00 0.918±0.00
ENSMUST00000153742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081029 ENSMUST00000122344 N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082223 ENSMUST00000121943 N/A N/A N/A N/A 2.730±0.00 3.137±0.00 N/A 1.710±0.58 N/A 1.617±0.00 N/A N/A N/A 1.436±0.37
ENSMUSG00000083710 ENSMUST00000118371 N/A N/A 0.044±0.00 0.010±0.00 N/A N/A N/A N/A 0.012±0.00 0.077±0.00 N/A N/A 0.025±0.02 N/A

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