C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000172_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000052061-ENSDARG00000052063 CGP 7955 7:52375619-52649610
GeneTranscriptPositionBiotype
ENSDARG00000052061 (col4a6)
collagen, type IV, alpha 6 		ENSDART00000121574 (col4a6-201) 52375619-52557318 protein_coding
ENSDARG00000052063 (col4a5)
collagen, type IV, alpha 5 (Alport syndrome) 		ENSDART00000073827 (col4a5-001) 52558412-52649610 protein_coding
ENSDART00000108738 (col4a5-201) 52594508-52648383 protein_coding
ENSDARG00000085662 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000121062 (5S_rRNA.1298-201) 52563704-52563818 rRNA
CIL_000172_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197565-ENSG00000188153 CGP 9606 X:108155607-108697545
GeneTranscriptPositionBiotype
ENSG00000188153 (COL4A5)
collagen, type IV, alpha 5 		ENST00000328300 (COL4A5-006) 108439882-108697541 protein_coding
ENST00000361603 (COL4A5-001) 108439882-108697545 protein_coding
ENST00000470339 (COL4A5-005) 108439942-108569035 retained_intron
ENST00000477429 (COL4A5-004) 108439844-108443091 processed_transcript
ENST00000483338 (COL4A5-002) 108582492-108627269 retained_intron
ENST00000489230 (COL4A5-003) 108670035-108687500 retained_intron
ENST00000504541 (COL4A5-010) 108692822-108696936 protein_coding
ENST00000505728 (COL4A5-011) 108622676-108626555 protein_coding
ENST00000510690 (COL4A5-008) 108674452-108677579 processed_transcript
ENST00000515658 (COL4A5-009) 108681877-108696762 protein_coding
ENSG00000189372 (RP6-149D17.1)
 ENST00000453808 (RP6-149D17.1-001) 108383398-108383993 unprocessed_pseudogene
ENSG00000197565 (COL4A6)
collagen, type IV, alpha 6 		ENST00000334504 (COL4A6-002) 108155607-108438430 protein_coding
ENST00000372216 (COL4A6-001) 108155607-108439472 protein_coding
ENST00000394872 (COL4A6-201) 108155608-108438430 protein_coding
ENST00000461897 (COL4A6-004) 108267642-108438430 processed_transcript
ENST00000468338 (COL4A6-005) 108213792-108439472 retained_intron
ENST00000477085 (COL4A6-003) 108267642-108439497 processed_transcript
ENST00000487645 (COL4A6-006) 108161631-108163598 processed_transcript
ENST00000538570 (COL4A6-202) 108155608-108438430 protein_coding
ENST00000545689 (COL4A6-203) 108155891-108438430 protein_coding
ENST00000621266 (COL4A6-204) 108155608-108438430 protein_coding
ENSG00000207146 (Y_RNA)
Y RNA 		ENST00000384417 (Y_RNA.1-693) 108676951-108677057 misc_RNA
CIL_000172_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031273-ENSMUSG00000031274 CGP 10090 X:141165403-141689234
GeneTranscriptPositionBiotype
ENSMUSG00000031273 (Col4a6)
collagen, type IV, alpha 6 		ENSMUST00000101205 (Col4a6-001) 141165403-141474076 protein_coding
ENSMUST00000137051 (Col4a6-002) 141186191-141207602 processed_transcript
ENSMUST00000151459 (Col4a6-003) 141189745-141192629 retained_intron
ENSMUSG00000031274 (Col4a5)
collagen, type IV, alpha 5 		ENSMUST00000112930 (Col4a5-002) 141475410-141689180 protein_coding
ENSMUST00000112931 (Col4a5-001) 141475385-141689234 protein_coding
ENSMUST00000128669 (Col4a5-004) 141658350-141675732 processed_transcript
ENSMUST00000130732 (Col4a5-003) 141630124-141689234 protein_coding
ENSMUSG00000081029 (Gm15077)
predicted gene 15077 		ENSMUST00000122344 (Gm15077-001) 141302349-141302710 processed_pseudogene
ENSMUSG00000081217 (Gm15268)
predicted gene 15268 		ENSMUST00000118845 (Gm15268-001) 141627959-141628468 processed_pseudogene
ENSMUSG00000081803 (Gm15282)
predicted gene 15282 		ENSMUST00000117707 (Gm15282-001) 141680442-141680741 processed_pseudogene
ENSMUSG00000082223 (Gm15079)
predicted gene 15079 		ENSMUST00000121943 (Gm15079-001) 141434973-141435188 processed_pseudogene
ENSMUSG00000083710 (Gm15078)
predicted gene 15078 		ENSMUST00000118371 (Gm15078-001) 141356178-141356959 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000172_0001ENSDARG00000052061ENSDART00000121574ENSDARG00000052063ENSDART00000073827ENSDART00000108738ENSDARG00000085662ENSDART00000121062CIL_000172_0002ENSG00000188153ENST00000328300ENST00000361603ENST00000470339ENST00000477429ENST00000483338ENST00000489230ENST00000504541ENST00000505728ENST00000510690ENST00000515658ENSG00000189372ENST00000453808ENSG00000197565ENST00000334504ENST00000372216ENST00000394872ENST00000461897ENST00000468338ENST00000477085ENST00000487645ENST00000538570ENST00000545689ENST00000621266ENSG00000207146ENST00000384417CIL_000172_0003ENSMUSG00000031273ENSMUST00000101205ENSMUST00000137051ENSMUST00000151459ENSMUSG00000031274ENSMUST00000112930ENSMUST00000112931ENSMUST00000128669ENSMUST00000130732ENSMUSG00000081029ENSMUST00000122344ENSMUSG00000081217ENSMUST00000118845ENSMUSG00000081803ENSMUST00000117707ENSMUSG00000082223ENSMUST00000121943ENSMUSG00000083710ENSMUST00000118371
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000172_0001ENSDARG00000052061ENSDART00000121574ENSDARG00000052063ENSDART00000073827ENSDART00000108738ENSDARG00000085662ENSDART00000121062CIL_000172_0002ENSG00000188153ENST00000328300ENST00000361603ENST00000470339ENST00000483338ENST00000504541ENSG00000189372ENST00000453808ENSG00000197565ENST00000334504ENST00000372216ENST00000394872ENST00000461897ENST00000468338ENST00000487645ENST00000538570ENST00000545689ENST00000621266ENSG00000207146ENST00000384417CIL_000172_0003ENSMUSG00000031273ENSMUST00000101205ENSMUST00000137051ENSMUSG00000031274ENSMUST00000112930ENSMUST00000112931ENSMUST00000130732ENSMUSG00000081029ENSMUST00000122344ENSMUSG00000081217ENSMUST00000118845ENSMUSG00000081803ENSMUST00000117707ENSMUSG00000082223ENSMUST00000121943ENSMUSG00000083710ENSMUST00000118371
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000052061 ENSDART00000121574 N/A N/A N/A 0.441±0.27 N/A N/A 0.232±0.11 3.489±1.55 N/A N/A 0.164±0.00 N/A N/A N/A
ENSDARG00000052063 ENSDART00000073827 N/A N/A N/A 0.532±0.16 N/A N/A 0.215±0.10 0.553±0.06 N/A N/A 0.401±0.00 N/A N/A N/A
ENSDART00000108738 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A
ENSDARG00000085662 ENSDART00000121062 N/A N/A N/A 8.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188153 ENST00000328300 N/A 1.825±0.00 N/A 0.356±0.00 N/A N/A 0.478±0.00 5.829±0.00 4.986±0.00 1.890±0.81 N/A 2.148±1.40 2.257±0.45 1.951±1.23
ENST00000361603 0.371±0.00 N/A 0.231±0.00 1.603±1.23 0.367±0.00 0.549±0.00 N/A 0.040±0.00 0.034±0.00 N/A 0.257±0.00 0.731±0.41 3.026±0.51 N/A
ENST00000470339 N/A N/A N/A N/A 1.098±0.00 N/A 1.676±0.00 N/A 18.908±0.00 4.665±0.00 N/A N/A N/A N/A
ENST00000477429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483338 N/A N/A N/A 1.102±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504541 N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 1.926±0.00 N/A N/A N/A N/A
ENST00000505728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189372 ENST00000453808 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A 0.312±0.00 N/A 0.044±0.00
ENSG00000197565 ENST00000334504 0.030±0.00 N/A N/A N/A 0.366±0.00 0.285±0.02 N/A 2.161±0.00 N/A 0.764±0.00 N/A 1.082±0.69 1.819±0.95 1.601±0.80
ENST00000372216 N/A 1.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394872 N/A N/A N/A N/A N/A N/A N/A N/A 6.479±0.00 N/A N/A N/A N/A N/A
ENST00000461897 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468338 N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A 0.716±0.00 N/A 1.310±0.00 N/A N/A
ENST00000477085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487645 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A
ENST00000538570 N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A 1.165±1.12 0.142±0.00 N/A 0.614±0.00 N/A N/A
ENST00000545689 0.213±0.00 0.619±0.00 N/A 0.074±0.00 N/A N/A 0.350±0.00 N/A N/A N/A 0.192±0.07 N/A N/A N/A
ENST00000621266 N/A N/A N/A 0.121±0.00 N/A N/A 0.667±0.25 N/A N/A N/A N/A 0.277±0.00 0.271±0.00 N/A
ENSG00000207146 ENST00000384417 N/A 0.151±0.00 N/A N/A N/A N/A 0.274±0.00 N/A N/A N/A N/A 2.131±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031273 ENSMUST00000101205 2.473±1.66 0.140±0.12 8.779±3.04 0.673±0.37 0.829±0.45 1.224±0.27 0.483±0.15 0.389±0.08 0.061±0.06 2.139±0.43 0.070±0.02 3.684±1.35 0.529±0.49 0.302±0.16
ENSMUST00000137051 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A
ENSMUST00000151459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031274 ENSMUST00000112930 N/A N/A N/A N/A 0.927±0.02 0.866±0.30 N/A 1.185±0.00 0.066±0.00 N/A 0.391±0.07 4.722±3.19 0.868±0.81 0.145±0.05
ENSMUST00000112931 2.782±2.12 1.898±0.25 13.035±0.22 0.708±0.27 1.090±0.44 2.018±0.35 3.660±0.12 3.275±0.54 0.193±0.06 8.208±0.55 0.313±0.07 3.833±1.13 1.400±0.81 0.702±0.10
ENSMUST00000128669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130732 0.278±0.00 N/A 5.117±0.00 0.836±0.04 0.801±0.05 2.396±0.69 N/A N/A 0.109±0.03 N/A 0.191±0.06 N/A 0.543±0.46 0.458±0.16
ENSMUSG00000081029 ENSMUST00000122344 N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000081217 ENSMUST00000118845 N/A N/A 0.183±0.05 N/A 0.270±0.00 N/A N/A N/A N/A N/A N/A 0.618±0.17 0.038±0.01 N/A
ENSMUSG00000081803 ENSMUST00000117707 N/A N/A 0.213±0.00 N/A N/A N/A N/A 0.489±0.22 N/A 0.452±0.01 N/A 0.890±0.43 0.164±0.15 0.453±0.00
ENSMUSG00000082223 ENSMUST00000121943 N/A N/A N/A N/A 2.730±0.00 3.137±0.00 N/A 1.710±0.58 N/A 1.617±0.00 N/A N/A N/A 1.436±0.37
ENSMUSG00000083710 ENSMUST00000118371 N/A N/A 0.044±0.00 0.010±0.00 N/A N/A N/A N/A 0.012±0.00 0.077±0.00 N/A N/A 0.025±0.02 N/A

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