C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caudal type homeobox 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031326 Cdx4 10090 + X:103321398-103330592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033689 Cdx4-001 103321398-103330592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLiverENSMUST00000033689
Transcript ID Adrenal Brain Kidney Liver
ENSMUST00000033689 0.039±0.00 0.004±0.00 0.050±0.01 0.104±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RR CIL_0006RR_0002 CGP X:103184176-103330592
CIL_0006S4 CIL_0006S4_0002 CGP X:103321398-103396092

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001568 IGI blood vessel development
GO:0001890 IGI placenta development
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060711 IGI labyrinthine layer development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036292 cdx4 caudal type homeo box transcription factor 4 protein_coding Danio_rerio
ENSG00000131264 CDX4 caudal type homeobox 4 protein_coding Homo_sapiens

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