C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caudal type homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033689 Cdx4-001 ENSMUSG00000031326 10090 + X:103321398-103330592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLiverENSMUST00000033689
Transcript ID Adrenal Brain Kidney Liver
ENSMUST00000033689 0.039±0.00 0.004±0.00 0.050±0.01 0.104±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RR CIL_0006RR_0002 CGP X:103184176-103330592
CIL_0006S4 CIL_0006S4_0002 CGP X:103321398-103396092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001568 IGI blood vessel development
GO:0001890 IGI placenta development
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060711 IGI labyrinthine layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373514 CDX4-001 protein_coding Homo_sapiens 0 760

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