C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031343 Gabra3 10090 - X:72432681-72656848 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055966 Gabra3-001 72432681-72656186 protein_coding
  ENSMUST00000114554 Gabra3-002 72434575-72656848 protein_coding
  ENSMUST00000137517 Gabra3-003 72501194-72656246 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055966ENSMUST00000114554ENSMUST00000137517
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055966 1.745±1.07 0.976±0.26 4.347±0.40 12.250±4.86 1.260±0.31 0.242±0.11 0.524±0.17 1.373±0.50 0.200±0.10 0.669±0.10 0.093±0.05 1.852±0.97 0.196±0.26 0.049±0.03
ENSMUST00000114554 1.017±0.12 1.102±0.20 N/A N/A 1.854±1.04 0.249±0.06 0.259±0.08 0.883±0.34 0.218±0.12 0.750±0.05 0.012±0.00 2.144±0.98 0.038±0.01 0.179±0.09
ENSMUST00000137517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.02 0.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000115 CIL_000115_0002 CGP X:72432681-72842602

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 IEA plasma membrane
GO:0006821 IEA chloride transport
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090883 gabra3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 protein_coding Danio_rerio
ENSG00000011677 GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 protein_coding Homo_sapiens

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