C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000115_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000011677-ENSG00000268089 CGP 9606 X:152166234-152657534
GeneTranscriptPositionBiotype
ENSG00000011677 (GABRA3)
gamma-aminobutyric acid (GABA) A receptor, alpha 3
ENST00000370314 (GABRA3-001) 152166234-152451358 protein_coding
ENST00000417858 (GABRA3-004) 152251058-152255998 processed_transcript
ENST00000497894 (GABRA3-003) 152187209-152189943 processed_transcript
ENST00000535043 (GABRA3-005) 152168228-152389497 protein_coding
ENSG00000223940 (KRT8P8)
keratin 8 pseudogene 8
ENST00000434750 (KRT8P8-001) 152479577-152481024 processed_pseudogene
ENSG00000231937 (RP11-329E24.6)
ENST00000453915 (RP11-329E24.6-001) 152138883-152186857 antisense
ENSG00000268089 (GABRQ)
gamma-aminobutyric acid (GABA) A receptor, theta
ENST00000598523 (GABRQ-001) 152638183-152657534 protein_coding
CIL_000115_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031343-ENSMUSG00000031344 CGP 10090 X:72432681-72842602
GeneTranscriptPositionBiotype
ENSMUSG00000031343 (Gabra3)
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
ENSMUST00000055966 (Gabra3-001) 72432681-72656186 protein_coding
ENSMUST00000114554 (Gabra3-002) 72434575-72656848 protein_coding
ENSMUST00000137517 (Gabra3-003) 72501194-72656246 processed_transcript
ENSMUSG00000031344 (Gabrq)
gamma-aminobutyric acid (GABA) A receptor, subunit theta
ENSMUST00000033711 (Gabrq-001) 72825436-72838544 protein_coding
ENSMUST00000114553 (Gabrq-002) 72825178-72842602 protein_coding
ENSMUSG00000081471 (Gm14735)
predicted gene 14735
ENSMUST00000121772 (Gm14735-001) 72467302-72470389 processed_pseudogene
ENSMUSG00000084156 (Gm14734)
predicted gene 14734
ENSMUST00000118221 (Gm14734-001) 72514704-72515150 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000115_0001ENSG00000011677ENST00000370314ENST00000417858ENST00000497894ENST00000535043ENSG00000223940ENST00000434750ENSG00000231937ENST00000453915ENSG00000268089ENST00000598523CIL_000115_0002ENSMUSG00000031343ENSMUST00000055966ENSMUST00000114554ENSMUST00000137517ENSMUSG00000031344ENSMUST00000033711ENSMUST00000114553ENSMUSG00000081471ENSMUST00000121772ENSMUSG00000084156ENSMUST00000118221
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000115_0001ENSG00000011677ENST00000370314ENST00000417858ENST00000535043ENSG00000223940ENST00000434750ENSG00000231937ENST00000453915ENSG00000268089ENST00000598523CIL_000115_0002ENSMUSG00000031343ENSMUST00000055966ENSMUST00000114554ENSMUST00000137517ENSMUSG00000031344ENSMUST00000033711ENSMUST00000114553ENSMUSG00000081471ENSMUST00000121772ENSMUSG00000084156ENSMUST00000118221
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000011677 ENST00000370314 N/A 0.004±0.00 N/A 7.056±0.17 0.015±0.00 0.042±0.00 N/A N/A N/A N/A N/A 0.014±0.01 1.069±0.16 0.574±0.00
ENST00000417858 N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535043 0.034±0.00 N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A 0.505±0.00 0.212±0.00
ENSG00000223940 ENST00000434750 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A 0.020±0.00 0.037±0.00 0.019±0.00
ENSG00000231937 ENST00000453915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.07 0.194±0.09
ENSG00000268089 ENST00000598523 0.002±0.00 0.069±0.00 0.010±0.00 1.127±0.98 0.011±0.00 0.055±0.05 0.018±0.01 0.031±0.00 0.088±0.00 N/A N/A 0.043±0.02 0.032±0.02 0.669±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031343 ENSMUST00000055966 1.745±1.07 0.976±0.26 4.347±0.40 12.250±4.86 1.260±0.31 0.242±0.11 0.524±0.17 1.373±0.50 0.200±0.10 0.669±0.10 0.093±0.05 1.852±0.97 0.196±0.26 0.049±0.03
ENSMUST00000114554 1.017±0.12 1.102±0.20 N/A N/A 1.854±1.04 0.249±0.06 0.259±0.08 0.883±0.34 0.218±0.12 0.750±0.05 0.012±0.00 2.144±0.98 0.038±0.01 0.179±0.09
ENSMUST00000137517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.02 0.056±0.00
ENSMUSG00000031344 ENSMUST00000033711 0.027±0.00 N/A 0.076±0.00 N/A 0.070±0.05 0.031±0.00 0.070±0.00 0.015±0.00 N/A 0.056±0.00 0.016±0.00 0.148±0.08 0.013±0.00 0.055±0.01
ENSMUST00000114553 0.088±0.02 0.149±0.03 0.087±0.04 0.730±0.24 0.059±0.03 0.031±0.01 0.041±0.02 0.018±0.00 0.017±0.01 0.209±0.09 0.012±0.01 0.196±0.09 0.014±0.00 0.031±0.01
ENSMUSG00000081471 ENSMUST00000121772 0.636±0.28 0.998±0.00 0.370±0.00 0.958±0.18 0.816±0.28 0.470±0.33 0.242±0.00 0.517±0.12 0.432±0.26 0.601±0.01 0.361±0.04 0.818±0.33 0.368±0.08 0.714±0.03
ENSMUSG00000084156 ENSMUST00000118221 0.215±0.16 0.592±0.28 0.417±0.06 0.462±0.22 0.799±0.52 0.447±0.27 0.446±0.26 0.401±0.13 0.249±0.16 0.531±0.10 0.183±0.00 0.739±0.54 0.433±0.04 0.135±0.03

Loading