C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: biglycan
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031375 Bgn 10090 + X:73483602-73495933 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033741 Bgn-001 73483602-73495933 protein_coding
  ENSMUST00000130873 Bgn-008 73483633-73486298 retained_intron
  ENSMUST00000133394 Bgn-005 73483602-73492746 processed_transcript
  ENSMUST00000140803 Bgn-002 73483639-73492382 retained_intron
  ENSMUST00000141945 Bgn-003 73483623-73492398 retained_intron
  ENSMUST00000155231 Bgn-006 73492057-73493310 processed_transcript
  ENSMUST00000169489 Bgn-201 73483635-73495929 protein_coding
  ENSMUST00000183174 Bgn-009 73494892-73495926 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033741ENSMUST00000133394ENSMUST00000155231ENSMUST00000169489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033741 122.838±15.90 118.005±10.89 284.741±34.24 12.362±8.75 100.642±15.85 80.392±17.85 97.180±15.99 98.620±5.39 24.734±9.26 285.581±20.88 12.051±2.01 166.640±54.80 23.518±19.18 11.396±5.30
ENSMUST00000133394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.429±0.00 N/A
ENSMUST00000155231 N/A N/A N/A 4.415±0.00 N/A N/A N/A N/A N/A N/A N/A 183.106±0.00 36.488±25.02 N/A
ENSMUST00000169489 N/A N/A N/A N/A N/A 19.542±5.94 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001V1 CIL_0001V1_0002 CGP X:73437315-73495933
CIL_0001V0 CIL_0001V0_0002 CGP X:73483602-73571005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001974 IEA blood vessel remodeling
GO:0005539 IDA glycosaminoglycan binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005622 IDA intracellular
GO:0009986 ISS cell surface
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030133 IEA transport vesicle
GO:0031012 IDA extracellular matrix
GO:0042383 IDA sarcolemma
GO:0050840 IDA extracellular matrix binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002945 bgnb biglycan b protein_coding Danio_rerio
ENSDARG00000017884 bgna biglycan a protein_coding Danio_rerio
ENSG00000182492 BGN biglycan protein_coding Homo_sapiens

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