C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: biglycan
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182492 BGN 9606 + X:153494939-153509554 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331595 BGN-001 153494939-153509554 protein_coding
  ENST00000431891 BGN-002 153494993-153506626 protein_coding
  ENST00000472615 BGN-004 153494981-153509546 processed_transcript
  ENST00000480756 BGN-005 153494983-153509546 processed_transcript
  ENST00000492658 BGN-006 153505869-153508805 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331595ENST00000472615ENST00000480756ENST00000492658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331595 21.082±0.00 N/A 7.259±0.00 3.520±2.17 12.895±0.00 0.940±0.00 28.542±27.00 44.065±33.97 13.287±8.82 94.783±89.51 11.238±10.36 94.906±58.88 388.803±95.96 42.873±1.24
ENST00000472615 16.064±0.00 95.964±0.00 N/A 16.847±0.00 41.981±0.00 19.326±0.00 N/A N/A 13.892±0.00 53.976±0.00 N/A N/A N/A 97.599±0.00
ENST00000480756 37.722±0.00 167.702±0.00 N/A 32.161±0.00 60.463±0.00 37.038±0.00 14.365±0.00 103.024±0.00 41.041±0.00 91.105±0.00 N/A 24.196±0.00 N/A 173.819±0.00
ENST00000492658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.860±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011A CIL_00011A_0001 CGP X:153444720-153495516
CIL_0001V1 CIL_0001V1_0001 CGP X:153447666-153509554
CIL_0001V0 CIL_0001V0_0001 CGP X:153494939-153582939

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001974 IEA blood vessel remodeling
GO:0005201 NAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005576 TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005622 IEA intracellular
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0008150 ND biological_process
GO:0009986 IDA cell surface
GO:0019800 IEA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030133 IDA transport vesicle
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0031012 IDA extracellular matrix
GO:0042383 IEA sarcolemma
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0050840 IEA extracellular matrix binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002945 bgnb biglycan b protein_coding Danio_rerio
ENSDARG00000017884 bgna biglycan a protein_coding Danio_rerio
ENSMUSG00000031375 Bgn biglycan protein_coding Mus_musculus

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