C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biglycan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169489 Bgn-201 ENSMUSG00000031375 10090 + X:73483635-73495929 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000169489
Transcript ID Colon
ENSMUST00000169489 19.542±5.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001V1 CIL_0001V1_0002 CGP X:73437315-73495933
CIL_0001V0 CIL_0001V0_0002 CGP X:73483602-73571005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005539 IDA glycosaminoglycan binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005622 IDA intracellular
GO:0009986 ISS cell surface
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0031012 IDA extracellular matrix
GO:0042383 IDA sarcolemma
GO:0050840 IDA extracellular matrix binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000049836 bgnb-001 protein_coding Danio_rerio 0 327
ENSDART00000128480 bgnb-201 protein_coding Danio_rerio 0 326
ENSDART00000145464 bgnb-002 retained_intron Danio_rerio 0 278
ENSDART00000132095 bgnb-003 processed_transcript Danio_rerio 5e-38 163
ENST00000331595 BGN-001 protein_coding Homo_sapiens 0 1406
ENST00000431891 BGN-002 protein_coding Homo_sapiens 0 433
ENST00000472615 BGN-004 processed_transcript Homo_sapiens 0 896
ENST00000480756 BGN-005 processed_transcript Homo_sapiens 0 1105
ENST00000492658 BGN-006 processed_transcript Homo_sapiens 0 411

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