C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biglycan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033741 Bgn-001 ENSMUSG00000031375 10090 + X:73483602-73495933 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033741 122.838±15.90 118.005±10.89 284.741±34.24 12.362±8.75 100.642±15.85 80.392±17.85 97.180±15.99 98.620±5.39 24.734±9.26 285.581±20.88 12.051±2.01 166.640±54.80 23.518±19.18 11.396±5.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001V1 CIL_0001V1_0002 CGP X:73437315-73495933
CIL_0001V0 CIL_0001V0_0002 CGP X:73483602-73571005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001974 IEA blood vessel remodeling
GO:0005539 IDA glycosaminoglycan binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005622 IDA intracellular
GO:0009986 ISS cell surface
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030133 IEA transport vesicle
GO:0031012 IDA extracellular matrix
GO:0042383 IDA sarcolemma
GO:0050840 IDA extracellular matrix binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000049836 bgnb-001 protein_coding Danio_rerio 0 327
ENSDART00000128480 bgnb-201 protein_coding Danio_rerio 0 326
ENSDART00000145464 bgnb-002 retained_intron Danio_rerio 0 278
ENSDART00000132095 bgnb-003 processed_transcript Danio_rerio 7e-38 163
ENST00000331595 BGN-001 protein_coding Homo_sapiens 0 1450
ENST00000431891 BGN-002 protein_coding Homo_sapiens 0 433
ENST00000472615 BGN-004 processed_transcript Homo_sapiens 0 896
ENST00000480756 BGN-005 processed_transcript Homo_sapiens 0 1105
ENST00000492658 BGN-006 processed_transcript Homo_sapiens 0 411

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