C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: host cell factor C1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031386 Hcfc1 10090 - X:73942792-73966357 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033761 Hcfc1-001 73942792-73966357 protein_coding
  ENSMUST00000114372 Hcfc1-005 73942797-73966351 protein_coding
  ENSMUST00000128136 Hcfc1-002 73942795-73949253 protein_coding
  ENSMUST00000128325 Hcfc1-008 73955121-73957429 processed_transcript
  ENSMUST00000131091 Hcfc1-006 73947195-73948346 processed_transcript
  ENSMUST00000156204 Hcfc1-007 73945321-73947432 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033761ENSMUST00000114372ENSMUST00000128136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033761 9.593±5.12 22.763±5.49 2.196±0.93 8.867±3.18 10.758±5.75 15.172±1.76 4.692±0.70 7.380±1.49 6.508±4.58 13.592±2.11 3.890±1.30 15.598±4.41 9.382±6.93 2.533±0.25
ENSMUST00000114372 3.380±2.28 4.485±1.03 N/A 4.561±1.58 3.225±0.56 3.309±0.68 2.025±0.34 2.334±0.89 2.722±1.08 3.774±0.00 1.581±0.48 4.063±1.33 5.994±2.14 0.782±0.31
ENSMUST00000128136 4.392±1.17 N/A 4.587±1.35 4.364±1.71 N/A N/A N/A 3.387±0.42 5.568±2.21 N/A 1.821±0.00 3.872±0.00 3.837±0.61 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LC CIL_0001LC_0002 CGP X:73922121-73966357
CIL_0007F4 CIL_0007F4_0002 CGP X:73942792-74023918

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000123 ISS histone acetyltransferase complex
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003682 ISS chromatin binding
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005671 IEA Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0010628 IEA positive regulation of gene expression
GO:0016020 IEA membrane
GO:0019046 IDA release from viral latency
GO:0042802 IEA identical protein binding
GO:0043025 ISS neuronal cell body
GO:0043254 IEA regulation of protein complex assembly
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043984 ISS histone H4-K16 acetylation
GO:0043995 ISS histone acetyltransferase activity (H4-K5 specific)
GO:0043996 ISS histone acetyltransferase activity (H4-K8 specific)
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046972 ISS histone acetyltransferase activity (H4-K16 specific)
GO:0048188 ISS Set1C/COMPASS complex
GO:0050821 ISS protein stabilization
GO:0070461 IEA SAGA-type complex
GO:0070688 IEA MLL5-L complex
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012519 hcfc1b host cell factor C1b protein_coding Danio_rerio
ENSDARG00000015990 hcfc1a host cell factor C1a protein_coding Danio_rerio
ENSG00000172534 HCFC1 host cell factor C1 protein_coding Homo_sapiens

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