C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: host cell factor C1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172534 HCFC1 9606 - X:153947553-153971807 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310441 HCFC1-001 153947553-153971807 protein_coding
  ENST00000369984 HCFC1-003 153947559-153971184 protein_coding
  ENST00000444191 HCFC1-004 153947557-153954121 protein_coding
  ENST00000461098 HCFC1-002 153960009-153962267 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310441ENST00000369984ENST00000444191
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310441 8.678±0.00 3.436±0.00 1.801±0.00 3.915±1.69 2.694±1.21 2.146±0.20 3.103±2.03 2.534±1.59 1.432±0.00 2.713±2.02 4.463±1.27 9.067±8.21 3.658±1.07 5.539±0.00
ENST00000369984 1.758±0.00 2.507±0.00 N/A 1.245±0.00 0.378±0.00 2.474±0.00 N/A N/A 0.979±0.00 0.921±0.00 N/A N/A N/A 2.363±1.28
ENST00000444191 6.363±0.00 12.425±0.00 N/A 3.639±0.00 7.168±0.00 7.291±0.00 3.222±0.00 9.553±0.00 5.527±0.00 6.256±0.00 5.113±0.00 11.450±1.34 4.300±0.57 7.873±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LC CIL_0001LC_0001 CGP X:153935263-153971807

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000123 IDA histone acetyltransferase complex
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003682 IDA chromatin binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003713 IMP transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005671 IDA Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006325 TAS chromatin organization
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0010628 IDA positive regulation of gene expression
GO:0016020 IDA membrane
GO:0019046 NAS release from viral latency
GO:0042802 IPI identical protein binding
GO:0043025 IDA neuronal cell body
GO:0043254 IDA regulation of protein complex assembly
GO:0043981 IDA histone H4-K5 acetylation
GO:0043982 IDA histone H4-K8 acetylation
GO:0043984 IDA histone H4-K16 acetylation
GO:0043995 IDA histone acetyltransferase activity (H4-K5 specific)
GO:0043996 IDA histone acetyltransferase activity (H4-K8 specific)
GO:0045787 TAS positive regulation of cell cycle
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046972 IDA histone acetyltransferase activity (H4-K16 specific)
GO:0048188 IDA Set1C/COMPASS complex
GO:0050821 IDA protein stabilization
GO:0070461 IDA SAGA-type complex
GO:0070688 IDA MLL5-L complex
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012519 hcfc1b host cell factor C1b protein_coding Danio_rerio
ENSDARG00000015990 hcfc1a host cell factor C1a protein_coding Danio_rerio
ENSMUSG00000031386 Hcfc1 host cell factor C1 protein_coding Mus_musculus

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