C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 3, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031399 Fam3a 10090 - X:74384719-74393272 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015427 Fam3a-007 74384761-74393003 protein_coding
  ENSMUST00000114138 Fam3a-005 74386912-74392687 protein_coding
  ENSMUST00000114139 Fam3a-010 74385302-74393103 protein_coding
  ENSMUST00000114141 Fam3a-008 74385204-74393182 protein_coding
  ENSMUST00000114142 Fam3a-006 74384761-74393103 protein_coding
  ENSMUST00000114143 Fam3a-001 74384719-74393272 protein_coding
  ENSMUST00000122894 Fam3a-002 74386422-74393255 protein_coding
  ENSMUST00000136716 Fam3a-003 74386856-74387755 retained_intron
  ENSMUST00000141604 Fam3a-004 74386912-74392750 nonsense_mediated_decay
  ENSMUST00000149218 Fam3a-011 74386632-74393103 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015427ENSMUST00000114138ENSMUST00000114141ENSMUST00000114142ENSMUST00000114143ENSMUST00000149218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015427 N/A N/A N/A 1.582±0.00 3.546±0.00 N/A N/A N/A N/A N/A N/A 3.898±0.27 2.480±1.13 0.066±0.00
ENSMUST00000114138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.120±0.00 0.679±0.00
ENSMUST00000114141 N/A N/A N/A 1.669±0.00 N/A N/A N/A N/A N/A N/A N/A 9.231±0.00 5.623±0.68 0.769±0.00
ENSMUST00000114142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.593±0.00 3.140±0.00 N/A
ENSMUST00000114143 18.244±2.35 17.668±4.92 15.565±1.60 7.702±5.68 12.157±3.43 20.094±3.02 9.165±0.84 18.749±1.89 7.227±2.21 19.274±2.17 7.794±0.60 17.880±5.37 10.774±5.30 2.322±0.24
ENSMUST00000149218 N/A N/A N/A N/A N/A 6.146±1.53 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LG CIL_0003LG_0002 CGP X:74369217-74393272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070675 fam3a family with sequence similarity 3, member A protein_coding Danio_rerio
ENSG00000071889 FAM3A family with sequence similarity 3, member A protein_coding Homo_sapiens

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