C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126903-ENSG00000071889 CGP 9606 X:154487306-154516242
GeneTranscriptPositionBiotype
ENSG00000071889 (FAM3A)
family with sequence similarity 3, member A 		ENST00000322269 (FAM3A-201) 154506160-154516242 protein_coding
ENST00000359889 (FAM3A-001) 154506159-154516236 protein_coding
ENST00000369641 (FAM3A-012) 154506535-154516238 protein_coding
ENST00000369643 (FAM3A-003) 154506171-154516116 protein_coding
ENST00000393572 (FAM3A-017) 154506640-154516160 protein_coding
ENST00000412894 (FAM3A-009) 154508289-154516170 nonsense_mediated_decay
ENST00000416319 (FAM3A-008) 154507247-154516215 nonsense_mediated_decay
ENST00000419205 (FAM3A-202) 154506160-154516242 protein_coding
ENST00000421517 (FAM3A-016) 154508316-154516165 nonsense_mediated_decay
ENST00000426266 (FAM3A-020) 154507406-154516217 protein_coding
ENST00000433619 (FAM3A-014) 154511868-154516229 nonsense_mediated_decay
ENST00000434658 (FAM3A-011) 154506204-154516242 nonsense_mediated_decay
ENST00000440318 (FAM3A-013) 154507680-154515821 nonsense_mediated_decay
ENST00000442929 (FAM3A-018) 154508572-154516209 protein_coding
ENST00000447601 (FAM3A-004) 154506171-154516239 protein_coding
ENST00000449971 (FAM3A-007) 154507203-154516230 nonsense_mediated_decay
ENST00000457212 (FAM3A-006) 154507811-154516237 nonsense_mediated_decay
ENST00000475657 (FAM3A-010) 154506711-154507591 retained_intron
ENST00000492763 (FAM3A-015) 154508769-154516165 processed_transcript
ENST00000497506 (FAM3A-019) 154508453-154516158 processed_transcript
ENST00000612856 (FAM3A-005) 154506173-154511412 retained_intron
ENST00000621967 (FAM3A-002) 154506171-154516242 nonsense_mediated_decay
ENSG00000126903 (SLC10A3)
solute carrier family 10, member 3 		ENST00000263512 (SLC10A3-201) 154487306-154490690 protein_coding
ENST00000369649 (SLC10A3-001) 154487306-154490614 protein_coding
ENST00000393586 (SLC10A3-004) 154487311-154490628 protein_coding
ENST00000393587 (SLC10A3-002) 154487343-154490663 protein_coding
ENST00000453912 (SLC10A3-003) 154488287-154490677 protein_coding
ENSG00000264484 (RN7SL697P)
RNA, 7SL, cytoplasmic 697, pseudogene 		ENST00000582484 (RN7SL697P-201) 154495815-154496113 misc_RNA
CIL_0003LG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032806-ENSMUSG00000031399 CGP 10090 X:74369217-74393272
GeneTranscriptPositionBiotype
ENSMUSG00000015290 (Ubl4)
ubiquitin-like 4 		ENSMUST00000015434 (Ubl4-005) 74367272-74368466 nonsense_mediated_decay
ENSMUST00000125914 (Ubl4-004) 74367797-74368503 processed_transcript
ENSMUST00000126117 (Ubl4-002) 74365719-74368558 processed_transcript
ENSMUST00000126191 (Ubl4-003) 74367743-74368513 retained_intron
ENSMUST00000140632 (Ubl4-006) 74367310-74368496 retained_intron
ENSMUST00000155676 (Ubl4-001) 74365718-74368673 protein_coding
ENSMUST00000178691 (Ubl4-201) 74367465-74373218 protein_coding
ENSMUSG00000031399 (Fam3a)
family with sequence similarity 3, member A 		ENSMUST00000015427 (Fam3a-007) 74384761-74393003 protein_coding
ENSMUST00000114138 (Fam3a-005) 74386912-74392687 protein_coding
ENSMUST00000114139 (Fam3a-010) 74385302-74393103 protein_coding
ENSMUST00000114141 (Fam3a-008) 74385204-74393182 protein_coding
ENSMUST00000114142 (Fam3a-006) 74384761-74393103 protein_coding
ENSMUST00000114143 (Fam3a-001) 74384719-74393272 protein_coding
ENSMUST00000122894 (Fam3a-002) 74386422-74393255 protein_coding
ENSMUST00000136716 (Fam3a-003) 74386856-74387755 retained_intron
ENSMUST00000141604 (Fam3a-004) 74386912-74392750 nonsense_mediated_decay
ENSMUST00000149218 (Fam3a-011) 74386632-74393103 nonsense_mediated_decay
ENSMUSG00000032806 (Slc10a3)
solute carrier family 10 (sodium/bile acid cotransporter family), member 3 		ENSMUST00000037967 (Slc10a3-001) 74369217-74373349 protein_coding
ENSMUST00000073067 (Slc10a3-002) 74369217-74373305 protein_coding
ENSMUST00000114146 (Slc10a3-003) 74369217-74373246 protein_coding
ENSMUST00000114147 (Slc10a3-004) 74369217-74371011 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LG_0001ENSG00000071889ENST00000322269ENST00000359889ENST00000369641ENST00000369643ENST00000393572ENST00000412894ENST00000416319ENST00000419205ENST00000421517ENST00000426266ENST00000433619ENST00000434658ENST00000440318ENST00000442929ENST00000447601ENST00000449971ENST00000457212ENST00000475657ENST00000492763ENST00000497506ENST00000612856ENST00000621967ENSG00000126903ENST00000263512ENST00000369649ENST00000393586ENST00000393587ENST00000453912ENSG00000264484ENST00000582484CIL_0003LG_0002ENSMUSG00000015290ENSMUST00000015434ENSMUST00000125914ENSMUST00000126117ENSMUST00000126191ENSMUST00000140632ENSMUST00000155676ENSMUST00000178691ENSMUSG00000031399ENSMUST00000015427ENSMUST00000114138ENSMUST00000114139ENSMUST00000114141ENSMUST00000114142ENSMUST00000114143ENSMUST00000122894ENSMUST00000136716ENSMUST00000141604ENSMUST00000149218ENSMUSG00000032806ENSMUST00000037967ENSMUST00000073067ENSMUST00000114146ENSMUST00000114147
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LG_0001ENSG00000071889ENST00000322269ENST00000359889ENST00000369641ENST00000369643ENST00000393572ENST00000412894ENST00000419205ENST00000426266ENST00000434658ENST00000447601ENST00000449971ENST00000475657ENST00000612856ENST00000621967ENSG00000126903ENST00000263512ENST00000369649ENST00000393586ENST00000393587ENST00000453912ENSG00000264484ENST00000582484CIL_0003LG_0002ENSMUSG00000015290ENSMUST00000015434ENSMUST00000125914ENSMUST00000126117ENSMUST00000155676ENSMUST00000178691ENSMUSG00000031399ENSMUST00000015427ENSMUST00000114138ENSMUST00000114141ENSMUST00000114142ENSMUST00000114143ENSMUST00000149218ENSMUSG00000032806ENSMUST00000037967ENSMUST00000073067ENSMUST00000114146ENSMUST00000114147
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071889 ENST00000322269 N/A N/A N/A N/A N/A N/A N/A N/A 6.101±0.00 N/A N/A N/A 7.711±1.54 N/A
ENST00000359889 N/A N/A N/A N/A 1.218±0.00 N/A 0.231±0.00 0.350±0.00 1.152±0.00 8.051±0.00 6.554±0.00 10.274±0.00 7.574±3.01 N/A
ENST00000369641 N/A 4.551±0.00 N/A N/A 4.644±0.00 N/A N/A N/A N/A N/A N/A 10.489±0.00 N/A N/A
ENST00000369643 8.059±0.00 9.222±0.00 N/A 6.046±5.37 12.325±0.00 6.193±4.85 N/A 13.889±0.00 6.463±0.00 12.700±0.00 0.570±0.00 6.496±6.13 N/A 10.517±0.00
ENST00000393572 N/A N/A N/A N/A N/A 3.406±2.72 0.315±0.00 11.311±0.00 0.986±0.00 N/A N/A N/A N/A N/A
ENST00000412894 N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419205 N/A N/A 1.079±0.00 6.575±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426266 N/A N/A N/A N/A 2.301±0.00 N/A 0.416±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000433619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434658 3.243±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.893±0.00
ENST00000440318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447601 5.492±0.00 4.590±0.00 N/A 3.780±1.29 6.837±0.00 9.040±0.00 19.429±0.00 5.256±0.00 8.695±0.00 6.774±0.00 4.919±4.41 13.283±10.02 13.449±5.21 4.102±0.21
ENST00000449971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.482±0.00 N/A N/A N/A
ENST00000457212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475657 N/A N/A 0.652±0.00 1.849±0.00 N/A N/A 0.245±0.00 1.304±0.00 N/A 0.790±0.00 3.112±0.00 9.485±0.00 8.765±0.00 2.943±0.00
ENST00000492763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612856 N/A 0.735±0.00 0.190±0.00 N/A N/A 0.247±0.00 0.059±0.00 N/A N/A N/A N/A 0.970±0.00 N/A 0.431±0.00
ENST00000621967 2.958±0.00 N/A N/A 0.641±0.00 3.262±0.00 2.944±0.00 N/A N/A N/A N/A N/A 8.045±0.00 2.316±0.00 4.039±0.00
ENSG00000126903 ENST00000263512 8.153±0.00 3.369±0.00 1.100±0.00 2.221±0.00 10.298±0.00 3.789±3.57 2.537±2.09 6.235±5.55 0.953±0.00 8.152±6.22 5.459±3.21 11.023±11.61 18.765±3.44 12.562±0.00
ENST00000369649 2.471±0.00 2.992±0.00 N/A 0.897±0.00 0.927±0.00 N/A 0.884±0.67 1.517±0.00 1.218±0.00 2.368±1.64 3.360±0.00 6.858±0.00 6.991±0.50 1.223±0.00
ENST00000393586 N/A N/A N/A N/A N/A N/A 0.462±0.00 N/A N/A N/A N/A 4.042±0.00 N/A 0.915±0.00
ENST00000393587 6.692±0.00 7.131±0.00 0.945±0.00 N/A N/A 2.723±1.00 0.143±0.00 N/A N/A N/A N/A 10.052±2.05 12.638±6.26 0.890±0.00
ENST00000453912 N/A N/A N/A 0.560±0.33 2.730±0.00 N/A N/A 0.280±0.00 N/A N/A N/A N/A N/A 1.567±0.00
ENSG00000264484 ENST00000582484 N/A 0.114±0.00 N/A 0.062±0.00 0.295±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015290 ENSMUST00000015434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.574±0.00 0.830±0.00
ENSMUST00000125914 N/A N/A N/A 28.486±0.00 N/A N/A N/A N/A N/A N/A N/A 41.637±0.00 49.334±12.86 3.747±0.00
ENSMUST00000126117 N/A N/A N/A 4.711±0.75 11.537±0.00 N/A N/A N/A N/A N/A N/A 15.133±0.52 3.152±0.00 0.993±0.00
ENSMUST00000126191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155676 21.735±1.77 27.411±3.07 23.949±3.59 11.757±4.51 16.913±3.28 18.402±2.48 31.234±1.11 19.599±3.87 13.402±1.08 18.020±0.76 25.345±1.48 21.011±8.66 9.708±4.45 1.793±0.82
ENSMUST00000178691 N/A 9.142±0.75 N/A N/A 6.019±0.08 12.203±1.02 N/A N/A 11.682±4.92 N/A N/A 14.163±0.00 14.796±5.70 3.509±1.61
ENSMUSG00000031399 ENSMUST00000015427 N/A N/A N/A 1.582±0.00 3.546±0.00 N/A N/A N/A N/A N/A N/A 3.898±0.27 2.480±1.13 0.066±0.00
ENSMUST00000114138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.120±0.00 0.679±0.00
ENSMUST00000114139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114141 N/A N/A N/A 1.669±0.00 N/A N/A N/A N/A N/A N/A N/A 9.231±0.00 5.623±0.68 0.769±0.00
ENSMUST00000114142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.593±0.00 3.140±0.00 N/A
ENSMUST00000114143 18.244±2.35 17.668±4.92 15.565±1.60 7.702±5.68 12.157±3.43 20.094±3.02 9.165±0.84 18.749±1.89 7.227±2.21 19.274±2.17 7.794±0.60 17.880±5.37 10.774±5.30 2.322±0.24
ENSMUST00000122894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149218 N/A N/A N/A N/A N/A 6.146±1.53 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032806 ENSMUST00000037967 5.341±0.94 7.587±0.66 5.934±1.24 N/A N/A N/A N/A 4.972±0.00 3.416±0.00 N/A N/A N/A 3.991±0.00 1.814±0.55
ENSMUST00000073067 7.150±0.46 N/A N/A N/A 7.766±3.71 7.952±0.68 N/A 6.935±1.05 4.917±0.31 4.694±0.00 N/A N/A 5.407±0.60 2.020±0.45
ENSMUST00000114146 6.603±0.91 14.300±4.23 N/A N/A 8.429±3.36 10.509±3.69 N/A 5.438±0.00 3.932±0.66 10.414±1.72 N/A 19.649±4.82 5.262±0.00 0.164±0.00
ENSMUST00000114147 N/A N/A N/A N/A 8.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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