C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 3, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114143 Fam3a-001 ENSMUSG00000031399 10090 - X:74384719-74393272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114143
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114143 18.244±2.35 17.668±4.92 15.565±1.60 7.702±5.68 12.157±3.43 20.094±3.02 9.165±0.84 18.749±1.89 7.227±2.21 19.274±2.17 7.794±0.60 17.880±5.37 10.774±5.30 2.322±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LG CIL_0003LG_0002 CGP X:74369217-74393272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322269 FAM3A-201 protein_coding Homo_sapiens 0 654
ENST00000359889 FAM3A-001 protein_coding Homo_sapiens 0 813
ENST00000369641 FAM3A-012 protein_coding Homo_sapiens 0 723
ENST00000369643 FAM3A-003 protein_coding Homo_sapiens 0 806
ENST00000393572 FAM3A-017 protein_coding Homo_sapiens 0 654
ENST00000412894 FAM3A-009 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000416319 FAM3A-008 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000419205 FAM3A-202 protein_coding Homo_sapiens 0 411
ENST00000421517 FAM3A-016 nonsense_mediated_decay Homo_sapiens 0 191
ENST00000426266 FAM3A-020 protein_coding Homo_sapiens 0 451
ENST00000433619 FAM3A-014 nonsense_mediated_decay Homo_sapiens 6e-39 165
ENST00000434658 FAM3A-011 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000440318 FAM3A-013 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000447601 FAM3A-004 protein_coding Homo_sapiens 0 817
ENST00000449971 FAM3A-007 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000457212 FAM3A-006 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000475657 FAM3A-010 retained_intron Homo_sapiens 0 274
ENST00000492763 FAM3A-015 processed_transcript Homo_sapiens 0 193
ENST00000497506 FAM3A-019 processed_transcript Homo_sapiens 3.00004e-41 172
ENST00000612856 FAM3A-005 retained_intron Homo_sapiens 0 632
ENST00000621967 FAM3A-002 nonsense_mediated_decay Homo_sapiens 0 654

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