C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 3, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071889 FAM3A 9606 - X:154506159-154516242 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322269 FAM3A-201 154506160-154516242 protein_coding
  ENST00000359889 FAM3A-001 154506159-154516236 protein_coding
  ENST00000369641 FAM3A-012 154506535-154516238 protein_coding
  ENST00000369643 FAM3A-003 154506171-154516116 protein_coding
  ENST00000393572 FAM3A-017 154506640-154516160 protein_coding
  ENST00000412894 FAM3A-009 154508289-154516170 nonsense_mediated_decay
  ENST00000416319 FAM3A-008 154507247-154516215 nonsense_mediated_decay
  ENST00000419205 FAM3A-202 154506160-154516242 protein_coding
  ENST00000421517 FAM3A-016 154508316-154516165 nonsense_mediated_decay
  ENST00000426266 FAM3A-020 154507406-154516217 protein_coding
  ENST00000433619 FAM3A-014 154511868-154516229 nonsense_mediated_decay
  ENST00000434658 FAM3A-011 154506204-154516242 nonsense_mediated_decay
  ENST00000440318 FAM3A-013 154507680-154515821 nonsense_mediated_decay
  ENST00000442929 FAM3A-018 154508572-154516209 protein_coding
  ENST00000447601 FAM3A-004 154506171-154516239 protein_coding
  ENST00000449971 FAM3A-007 154507203-154516230 nonsense_mediated_decay
  ENST00000457212 FAM3A-006 154507811-154516237 nonsense_mediated_decay
  ENST00000475657 FAM3A-010 154506711-154507591 retained_intron
  ENST00000492763 FAM3A-015 154508769-154516165 processed_transcript
  ENST00000497506 FAM3A-019 154508453-154516158 processed_transcript
  ENST00000612856 FAM3A-005 154506173-154511412 retained_intron
  ENST00000621967 FAM3A-002 154506171-154516242 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322269ENST00000359889ENST00000369641ENST00000369643ENST00000393572ENST00000412894ENST00000419205ENST00000426266ENST00000434658ENST00000447601ENST00000449971ENST00000475657ENST00000612856ENST00000621967
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322269 N/A N/A N/A N/A N/A N/A N/A N/A 6.101±0.00 N/A N/A N/A 7.711±1.54 N/A
ENST00000359889 N/A N/A N/A N/A 1.218±0.00 N/A 0.231±0.00 0.350±0.00 1.152±0.00 8.051±0.00 6.554±0.00 10.274±0.00 7.574±3.01 N/A
ENST00000369641 N/A 4.551±0.00 N/A N/A 4.644±0.00 N/A N/A N/A N/A N/A N/A 10.489±0.00 N/A N/A
ENST00000369643 8.059±0.00 9.222±0.00 N/A 6.046±5.37 12.325±0.00 6.193±4.85 N/A 13.889±0.00 6.463±0.00 12.700±0.00 0.570±0.00 6.496±6.13 N/A 10.517±0.00
ENST00000393572 N/A N/A N/A N/A N/A 3.406±2.72 0.315±0.00 11.311±0.00 0.986±0.00 N/A N/A N/A N/A N/A
ENST00000412894 N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419205 N/A N/A 1.079±0.00 6.575±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426266 N/A N/A N/A N/A 2.301±0.00 N/A 0.416±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000434658 3.243±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.893±0.00
ENST00000447601 5.492±0.00 4.590±0.00 N/A 3.780±1.29 6.837±0.00 9.040±0.00 19.429±0.00 5.256±0.00 8.695±0.00 6.774±0.00 4.919±4.41 13.283±10.02 13.449±5.21 4.102±0.21
ENST00000449971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.482±0.00 N/A N/A N/A
ENST00000475657 N/A N/A 0.652±0.00 1.849±0.00 N/A N/A 0.245±0.00 1.304±0.00 N/A 0.790±0.00 3.112±0.00 9.485±0.00 8.765±0.00 2.943±0.00
ENST00000612856 N/A 0.735±0.00 0.190±0.00 N/A N/A 0.247±0.00 0.059±0.00 N/A N/A N/A N/A 0.970±0.00 N/A 0.431±0.00
ENST00000621967 2.958±0.00 N/A N/A 0.641±0.00 3.262±0.00 2.944±0.00 N/A N/A N/A N/A N/A 8.045±0.00 2.316±0.00 4.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LG CIL_0003LG_0001 CGP X:154487306-154516242

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070675 fam3a family with sequence similarity 3, member A protein_coding Danio_rerio
ENSMUSG00000031399 Fam3a family with sequence similarity 3, member A protein_coding Mus_musculus

Loading