C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: dyskeratosis congenita 1, dyskerin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031403 Dkc1 10090 + X:75095854-75109777 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033776 Dkc1-001 75095854-75109777 protein_coding
  ENSMUST00000131155 Dkc1-011 75096053-75102550 protein_coding
  ENSMUST00000131867 Dkc1-004 75096101-75098947 processed_transcript
  ENSMUST00000132000 Dkc1-002 75096086-75098887 protein_coding
  ENSMUST00000135389 Dkc1-003 75096099-75098797 retained_intron
  ENSMUST00000137286 Dkc1-010 75105949-75108276 retained_intron
  ENSMUST00000140609 Dkc1-006 75096115-75102472 nonsense_mediated_decay
  ENSMUST00000145222 Dkc1-005 75096546-75098819 retained_intron
  ENSMUST00000151327 Dkc1-007 75099918-75107211 retained_intron
  ENSMUST00000153844 Dkc1-012 75100053-75108243 nonsense_mediated_decay
  ENSMUST00000154422 Dkc1-009 75100948-75105766 processed_transcript
  ENSMUST00000154936 Dkc1-008 75100259-75105718 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000033776ENSMUST00000131155ENSMUST00000154422
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033776 5.696±0.62 4.261±0.42 6.187±0.29 6.851±2.35 6.615±1.56 2.510±0.00 2.761±0.14 10.232±6.70 4.191±0.48 5.679±0.83 5.975±2.54 5.805±0.43 0.656±0.11
ENSMUST00000131155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.113±0.00 N/A N/A
ENSMUST00000154422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.616±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LH CIL_0003LH_0002 CGP X:74966843-75109777
CIL_0003LI CIL_0003LI_0002 CGP X:75095854-75131016

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000154 ISA rRNA modification
GO:0001522 IEA pseudouridine synthesis
GO:0003720 IEA telomerase activity
GO:0003723 TAS RNA binding
GO:0004730 TAS pseudouridylate synthase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005697 IEA telomerase holoenzyme complex
GO:0005730 IC nucleolus
GO:0006396 TAS RNA processing
GO:0009982 IEA pseudouridine synthase activity
GO:0030519 ISS snoRNP binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016484 dkc1 dyskeratosis congenita 1, dyskerin protein_coding Danio_rerio
ENSG00000130826 DKC1 dyskeratosis congenita 1, dyskerin protein_coding Homo_sapiens

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