C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dyskeratosis congenita 1, dyskerin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033776 Dkc1-001 ENSMUSG00000031403 10090 + X:75095854-75109777 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000033776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033776 5.696±0.62 4.261±0.42 6.187±0.29 6.851±2.35 6.615±1.56 2.510±0.00 2.761±0.14 10.232±6.70 4.191±0.48 5.679±0.83 5.975±2.54 5.805±0.43 0.656±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LH CIL_0003LH_0002 CGP X:74966843-75109777
CIL_0003LI CIL_0003LI_0002 CGP X:75095854-75131016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000154 ISA rRNA modification
GO:0001522 IEA pseudouridine synthesis
GO:0003720 IEA telomerase activity
GO:0003723 TAS RNA binding
GO:0004730 TAS pseudouridylate synthase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005697 IEA telomerase holoenzyme complex
GO:0005730 IC nucleolus
GO:0006396 TAS RNA processing
GO:0009982 IEA pseudouridine synthase activity
GO:0030519 ISS snoRNP binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369550 DKC1-001 protein_coding Homo_sapiens 0 1877
ENST00000412124 DKC1-011 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000413910 DKC1-008 protein_coding Homo_sapiens 0 929
ENST00000426673 DKC1-005 nonsense_mediated_decay Homo_sapiens 0 833
ENST00000437719 DKC1-010 protein_coding Homo_sapiens 0 832
ENST00000452771 DKC1-012 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000473552 DKC1-009 processed_transcript Homo_sapiens 0 621
ENST00000475966 DKC1-003 processed_transcript Homo_sapiens 0 708
ENST00000481062 DKC1-004 retained_intron Homo_sapiens 0 267
ENST00000484317 DKC1-002 retained_intron Homo_sapiens 0 556
ENST00000620277 DKC1-201 protein_coding Homo_sapiens 0 1740

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