C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dyskeratosis congenita 1, dyskerin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131155 Dkc1-011 ENSMUSG00000031403 10090 + X:75096053-75102550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENSMUST00000131155
Transcript ID Ovary
ENSMUST00000131155 15.113±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LH CIL_0003LH_0002 CGP X:74966843-75109777
CIL_0003LI CIL_0003LI_0002 CGP X:75095854-75131016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000154 ISA rRNA modification
GO:0001522 IEA pseudouridine synthesis
GO:0003723 TAS RNA binding
GO:0004730 TAS pseudouridylate synthase activity
GO:0005730 IC nucleolus
GO:0006396 TAS RNA processing
GO:0009982 IEA pseudouridine synthase activity
GO:0030519 ISS snoRNP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369550 DKC1-001 protein_coding Homo_sapiens 0 929
ENST00000412124 DKC1-011 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000413910 DKC1-008 protein_coding Homo_sapiens 0 1125
ENST00000426673 DKC1-005 nonsense_mediated_decay Homo_sapiens 0 207
ENST00000437719 DKC1-010 protein_coding Homo_sapiens 0 832
ENST00000452771 DKC1-012 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000473552 DKC1-009 processed_transcript Homo_sapiens 0 621
ENST00000475966 DKC1-003 processed_transcript Homo_sapiens 0 207
ENST00000484317 DKC1-002 retained_intron Homo_sapiens 0 207
ENST00000620277 DKC1-201 protein_coding Homo_sapiens 0 929

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