C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | dyskeratosis congenita 1, dyskerin | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000140609  |
Dkc1-006 |
ENSMUSG00000031403 |
10090 | + |
X:75096115-75102472  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0003LH | CIL_0003LH_0002 | CGP | X:74966843-75109777 |
| CIL_0003LI | CIL_0003LI_0002 | CGP | X:75095854-75131016 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000154 | ISA | rRNA modification |
| GO:0001522 | IEA | pseudouridine synthesis |
| GO:0003723 | TAS | RNA binding |
| GO:0004730 | TAS | pseudouridylate synthase activity |
| GO:0005730 | IC | nucleolus |
| GO:0006396 | TAS | RNA processing |
| GO:0009982 | IEA | pseudouridine synthase activity |
| GO:0030519 | ISS | snoRNP binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000369550
|
DKC1-001 | protein_coding | Homo_sapiens | 0 | 593 |
|
ENST00000412124
|
DKC1-011 | nonsense_mediated_decay | Homo_sapiens | 0 | 195 |
|
ENST00000413910
|
DKC1-008 | protein_coding | Homo_sapiens | 0 | 593 |
|
ENST00000426673
|
DKC1-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 270 |
|
ENST00000437719
|
DKC1-010 | protein_coding | Homo_sapiens | 0 | 545 |
|
ENST00000452771
|
DKC1-012 | nonsense_mediated_decay | Homo_sapiens | 0 | 992 |
|
ENST00000473552
|
DKC1-009 | processed_transcript | Homo_sapiens | 0 | 592 |
|
ENST00000475966
|
DKC1-003 | processed_transcript | Homo_sapiens | 4e-16 | 90 |
|
ENST00000484317
|
DKC1-002 | retained_intron | Homo_sapiens | 0 | 278 |
|
ENST00000620277
|
DKC1-201 | protein_coding | Homo_sapiens | 0 | 593 |
