C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein gene with multiple splicing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031586 Rbpms 10090 - 8:33782643-33929863 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033994 Rbpms-001 33782647-33929806 protein_coding
  ENSMUST00000033995 Rbpms-003 33803939-33929805 protein_coding
  ENSMUST00000053251 Rbpms-002 33782643-33929863 protein_coding
  ENSMUST00000182184 Rbpms-005 33784066-33853673 processed_transcript
  ENSMUST00000182256 Rbpms-009 33784052-33844890 nonsense_mediated_decay
  ENSMUST00000182871 Rbpms-006 33863007-33891764 processed_transcript
  ENSMUST00000182926 Rbpms-011 33784064-33806799 nonsense_mediated_decay
  ENSMUST00000182987 Rbpms-004 33783781-33929816 nonsense_mediated_decay
  ENSMUST00000183062 Rbpms-010 33806742-33843671 protein_coding
  ENSMUST00000183088 Rbpms-007 33806764-33889782 protein_coding
  ENSMUST00000183122 Rbpms-013 33784072-33797214 retained_intron
  ENSMUST00000183336 Rbpms-012 33784061-33806836 nonsense_mediated_decay
  ENSMUST00000191473 Rbpms-201 33782644-33929841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033994ENSMUST00000033995ENSMUST00000053251ENSMUST00000182184ENSMUST00000182987ENSMUST00000191473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033994 N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A 0.814±0.00 8.110±0.00 N/A N/A
ENSMUST00000033995 37.693±6.77 34.930±21.16 N/A 1.731±0.00 27.499±6.96 27.078±2.97 40.093±7.93 22.766±3.92 7.646±2.22 46.739±4.50 2.597±0.65 74.233±10.53 29.046±13.93 5.060±0.85
ENSMUST00000053251 44.025±16.94 38.234±8.10 62.099±1.22 2.434±0.22 35.220±9.38 23.614±3.61 36.719±5.87 27.615±5.20 6.763±1.37 64.618±6.87 0.577±0.08 93.297±38.38 18.542±0.62 3.763±1.52
ENSMUST00000182184 N/A N/A N/A N/A 16.983±0.00 N/A N/A N/A 10.703±2.00 N/A 3.277±0.29 N/A 20.427±0.00 7.231±1.01
ENSMUST00000182987 N/A 24.992±6.03 N/A 0.520±0.00 14.735±1.33 13.906±0.00 N/A 9.942±0.00 5.135±0.00 26.169±3.46 N/A 21.826±0.00 36.355±12.06 1.163±0.00
ENSMUST00000191473 9.701±2.59 N/A 35.517±2.57 N/A N/A N/A 16.649±1.71 5.793±0.31 2.047±0.78 N/A 1.071±0.00 16.182±9.39 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IH CIL_0008IH_0002 VISTA 8:33603821-34207069
CIL_0008D0 CIL_0008D0_0002 VISTA 8:33748285-34351942

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003713 ISS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008143 ISS poly(A) binding
GO:0010862 ISS positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0044822 IEA poly(A) RNA binding
GO:0060391 ISS positive regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088558 RBPMS RNA binding protein with multiple splicing protein_coding Danio_rerio
ENSG00000157110 RBPMS RNA binding protein with multiple splicing protein_coding Homo_sapiens

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