C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein gene with multiple splicing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182987 Rbpms-004 ENSMUSG00000031586 10090 - 8:33783781-33929816 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000182987
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000182987 24.992±6.03 0.520±0.00 14.735±1.33 13.906±0.00 9.942±0.00 5.135±0.00 26.169±3.46 21.826±0.00 36.355±12.06 1.163±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IH CIL_0008IH_0002 VISTA 8:33603821-34207069
CIL_0008D0 CIL_0008D0_0002 VISTA 8:33748285-34351942

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003713 ISS transcription coactivator activity
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008143 ISS poly(A) binding
GO:0010862 ISS positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0060391 ISS positive regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287771 RBPMS-004 protein_coding Homo_sapiens 0 863
ENST00000320203 RBPMS-002 protein_coding Homo_sapiens 0 957
ENST00000339877 RBPMS-003 protein_coding Homo_sapiens 0 863
ENST00000397323 RBPMS-001 protein_coding Homo_sapiens 0 1345
ENST00000517860 RBPMS-007 protein_coding Homo_sapiens 0 826
ENST00000519359 RBPMS-020 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000519647 RBPMS-017 protein_coding Homo_sapiens 0 704
ENST00000519657 RBPMS-010 processed_transcript Homo_sapiens 0 370
ENST00000520161 RBPMS-015 protein_coding Homo_sapiens 0 701
ENST00000520191 RBPMS-006 protein_coding Homo_sapiens 0 702
ENST00000520916 RBPMS-005 processed_transcript Homo_sapiens 0 375
ENST00000520971 RBPMS-009 processed_transcript Homo_sapiens 0 279
ENST00000521370 RBPMS-011 processed_transcript Homo_sapiens 0 368
ENST00000522694 RBPMS-014 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000522708 RBPMS-021 processed_transcript Homo_sapiens 0 287
ENST00000523104 RBPMS-012 processed_transcript Homo_sapiens 0 359
ENST00000523115 RBPMS-016 protein_coding Homo_sapiens 0 604
ENST00000523717 RBPMS-019 processed_transcript Homo_sapiens 0 701

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