C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein with multiple splicing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157110 RBPMS 9606 + 8:30384479-30572261 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287771 RBPMS-004 30384527-30572256 protein_coding
  ENST00000320203 RBPMS-002 30384511-30572256 protein_coding
  ENST00000339877 RBPMS-003 30384511-30547522 protein_coding
  ENST00000397323 RBPMS-001 30384479-30572261 protein_coding
  ENST00000517860 RBPMS-007 30385085-30545164 protein_coding
  ENST00000519359 RBPMS-020 30474786-30570700 nonsense_mediated_decay
  ENST00000519647 RBPMS-017 30387208-30547492 protein_coding
  ENST00000519657 RBPMS-010 30558181-30570761 processed_transcript
  ENST00000520161 RBPMS-015 30385203-30547483 protein_coding
  ENST00000520191 RBPMS-006 30442617-30545591 protein_coding
  ENST00000520916 RBPMS-005 30564050-30570994 processed_transcript
  ENST00000520971 RBPMS-009 30564367-30570761 processed_transcript
  ENST00000521370 RBPMS-011 30556453-30570761 processed_transcript
  ENST00000521816 RBPMS-018 30397927-30474816 processed_transcript
  ENST00000522099 RBPMS-013 30545200-30547519 processed_transcript
  ENST00000522694 RBPMS-014 30479330-30547517 nonsense_mediated_decay
  ENST00000522708 RBPMS-021 30453660-30504318 processed_transcript
  ENST00000523104 RBPMS-012 30556637-30570757 processed_transcript
  ENST00000523115 RBPMS-016 30387064-30544556 protein_coding
  ENST00000523717 RBPMS-019 30442720-30544622 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287771ENST00000320203ENST00000339877ENST00000397323ENST00000519647ENST00000519657ENST00000520191ENST00000520916ENST00000522099ENST00000523115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287771 N/A 7.389±0.00 N/A 0.616±0.00 4.792±0.00 N/A N/A N/A 4.578±0.00 N/A N/A N/A N/A N/A
ENST00000320203 N/A N/A N/A 0.384±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000339877 124.879±0.00 32.212±0.00 N/A 2.686±0.00 50.551±0.00 87.093±0.00 56.622±0.00 72.681±0.00 36.495±0.00 105.338±0.00 12.666±0.00 53.491±26.27 53.762±21.85 33.557±20.95
ENST00000397323 22.068±0.00 11.824±0.00 N/A N/A 9.674±0.00 39.583±0.00 15.057±13.99 25.384±0.00 N/A 11.067±6.53 1.654±1.09 18.833±11.32 12.653±4.28 7.656±3.86
ENST00000519647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.719±0.00 N/A N/A N/A
ENST00000519657 N/A N/A N/A 0.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520191 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.696±0.00 N/A N/A N/A N/A
ENST00000520916 N/A 7.339±0.00 4.756±0.00 0.291±0.00 N/A N/A 1.130±0.00 0.461±0.00 N/A N/A 0.859±0.00 N/A N/A N/A
ENST00000522099 N/A N/A N/A 1.395±0.00 N/A N/A N/A 3.039±0.00 N/A N/A N/A N/A N/A N/A
ENST00000523115 N/A N/A N/A 3.193±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0008143 IDA poly(A) binding
GO:0010862 IDA positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0044822 IDA poly(A) RNA binding
GO:0060391 IDA positive regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088558 RBPMS RNA binding protein with multiple splicing protein_coding Danio_rerio
ENSMUSG00000031586 Rbpms RNA binding protein gene with multiple splicing protein_coding Mus_musculus

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