C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein gene with multiple splicing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033995 Rbpms-003 ENSMUSG00000031586 10090 - 8:33803939-33929805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033995
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033995 37.693±6.77 34.930±21.16 1.731±0.00 27.499±6.96 27.078±2.97 40.093±7.93 22.766±3.92 7.646±2.22 46.739±4.50 2.597±0.65 74.233±10.53 29.046±13.93 5.060±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IH CIL_0008IH_0002 VISTA 8:33603821-34207069
CIL_0008D0 CIL_0008D0_0002 VISTA 8:33748285-34351942

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003713 ISS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008143 ISS poly(A) binding
GO:0010862 ISS positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0044822 IEA poly(A) RNA binding
GO:0060391 ISS positive regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287771 RBPMS-004 protein_coding Homo_sapiens 0 863
ENST00000320203 RBPMS-002 protein_coding Homo_sapiens 0 863
ENST00000339877 RBPMS-003 protein_coding Homo_sapiens 0 1133
ENST00000397323 RBPMS-001 protein_coding Homo_sapiens 0 863
ENST00000517860 RBPMS-007 protein_coding Homo_sapiens 0 826
ENST00000519359 RBPMS-020 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000519647 RBPMS-017 protein_coding Homo_sapiens 0 931
ENST00000520161 RBPMS-015 protein_coding Homo_sapiens 0 918
ENST00000520191 RBPMS-006 protein_coding Homo_sapiens 0 702
ENST00000522099 RBPMS-013 processed_transcript Homo_sapiens 0 268
ENST00000522694 RBPMS-014 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000522708 RBPMS-021 processed_transcript Homo_sapiens 0 287
ENST00000523115 RBPMS-016 protein_coding Homo_sapiens 0 604
ENST00000523717 RBPMS-019 processed_transcript Homo_sapiens 0 701

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