C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051867 Lsm6-001 ENSMUSG00000031683 10090 - 8:78806451-78821140 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051867
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051867 2.965±1.12 4.368±0.78 6.837±2.01 5.480±3.23 2.576±0.21 2.098±0.37 1.508±0.15 3.206±0.29 4.964±2.77 3.368±0.44 3.498±0.34 3.374±0.90 2.904±1.01 1.141±0.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296581 LSM6-001 protein_coding Homo_sapiens 0 394
ENST00000502781 LSM6-002 protein_coding Homo_sapiens 0 385
ENST00000504181 LSM6-005 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000507449 LSM6-006 retained_intron Homo_sapiens 0 294
ENST00000515311 LSM6-007 nonsense_mediated_decay Homo_sapiens 0 394

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