C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146824 Lsm6-004 ENSMUSG00000031683 10090 - 8:78808058-78813214 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000146824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000146824 2.821±0.03 4.678±0.00 18.326±0.00 28.662±18.11 6.675±3.45 1.928±0.00 5.942±1.45 6.844±1.37 15.798±11.52 4.891±1.14 21.189±3.82 45.902±31.13 57.217±50.79 8.605±10.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296581 LSM6-001 protein_coding Homo_sapiens 0 383
ENST00000502781 LSM6-002 protein_coding Homo_sapiens 0 383
ENST00000504181 LSM6-005 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000507449 LSM6-006 retained_intron Homo_sapiens 0 294
ENST00000515311 LSM6-007 nonsense_mediated_decay Homo_sapiens 0 383

Loading