C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130325 Lsm6-002 ENSMUSG00000031683 10090 - 8:78804865-78821140 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130325 1.330±0.45 1.298±0.25 1.846±0.59 2.407±0.83 1.148±0.25 0.851±0.23 0.909±0.14 1.320±0.23 1.729±1.06 1.392±0.15 1.125±0.18 1.412±0.61 2.213±1.00 1.163±0.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296581 LSM6-001 protein_coding Homo_sapiens 0 381
ENST00000502781 LSM6-002 protein_coding Homo_sapiens 0 383
ENST00000504181 LSM6-005 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000507449 LSM6-006 retained_intron Homo_sapiens 0 294
ENST00000515311 LSM6-007 nonsense_mediated_decay Homo_sapiens 0 381

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