C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119870 Cngb1-001 ENSMUSG00000031789 10090 - 8:95239045-95306585 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119870
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119870 0.070±0.02 0.019±0.00 0.061±0.00 0.034±0.01 0.065±0.00 0.027±0.01 0.006±0.00 0.069±0.04 0.052±0.03 0.206±0.07 0.010±0.00 0.331±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S0 CIL_0004S0_0002 CGP 8:95099832-95306585
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004RZ CIL_0004RZ_0002 CGP 8:95239045-95326323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006812 IEA cation transport
GO:0007602 IMP phototransduction
GO:0007603 IBA phototransduction, visible light
GO:0007608 IMP sensory perception of smell
GO:0016020 IDA membrane
GO:0017071 IEA intracellular cyclic nucleotide activated cation channel complex
GO:0030553 IBA cGMP binding
GO:0033365 IMP protein localization to organelle
GO:0042391 IBA regulation of membrane potential
GO:0043195 IEA terminal bouton
GO:0043855 IMP cyclic nucleotide-gated ion channel activity
GO:0045494 IMP photoreceptor cell maintenance
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0051290 IEA protein heterotetramerization
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IEA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251102 CNGB1-001 protein_coding Homo_sapiens 0 2309
ENST00000564448 CNGB1-003 protein_coding Homo_sapiens 0 2309
ENST00000565942 CNGB1-008 protein_coding Homo_sapiens 0 348
ENST00000569643 CNGB1-009 retained_intron Homo_sapiens 0 848

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